Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76630 1375 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G48150 55 / 3e-07 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G16320 45 / 0.0003 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37460 45 / 0.0005 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025600 [exp] 53 / 1e-06 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 49 / 3e-05 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G128900 [exp] 46 / 0.0001 AT1G17680 711 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G075700 [exp] 46 / 0.0001 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 45 / 0.0004 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G164000 [exp] 44 / 0.001 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025170 [exp] 1419 / 0 AT1G76630 1251 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004779 [exp] 55 / 5e-07 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 54 / 7e-07 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042152 [exp] 53 / 1e-06 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004242 [exp] 50 / 9e-06 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10003576 [exp] 49 / 4e-05 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 46 / 0.0002 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021336 [exp] 45 / 0.0003 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G001700.1 pacid=42779984 polypeptide=Potri.002G001700.1.p locus=Potri.002G001700 ID=Potri.002G001700.1.v4.1 annot-version=v4.1 ATGCTGAAATCGGGAGAAGAACAAGAAGAAGATTTAGAAAAGCAAAGAGCTGCAGTTGTGGAGTTGAGAGAGTTAGAGAAGTCAGTAGAAGCCAATCCTG ATGACCCCTCTCTTCGATTCAACCTCGCAGTGTATTTGTGGGAAAGATGCGAATGCAAGGAGAAGGCAGCAGAACATTTTGTTGTAGCAGTGAAACTGAA CCCTCAGAATGCAACTGCTTTCAAATATTTGGGTCATTATTACTACGAGAAGGAGAAGGTCAGGGCTCTCAAATGCTACCAGAGGGCTGTCTCCCTCAAC CCAGACGATTCTCAAAGCGGAGATGCACTTTGTGATATTTTGGACCAGACTGGAAAGGAGACCCTGGAGCTCTCTCTCTGCACTGAAGCCTCTCAAAAAT CACCAAGAGCCTTTTGGGCTTTCAGGAGACTGGGTTACATTCACCTCCACCATAATAGATGCTCTGAAGCTGTTCATACTCTTCAGCATGCCATTCGAGG TTTTCCCACCTCTCCTGATTTGTGGGAAGCTTTGGGTCTTGCCTACCAGAAACTTGGCATGTATACTGCTGCTACTAAGTCTTATGGACGAGCCATTGAG TTGGAGGATAGGAGAGTTTTTGCTCTCATTCAAAGTGGAAATATCTTCTTGACGCTCGGAAATTTCCGAAAGGGAGTTGAGCAGTTTCAGCGAGCTTTGG AGATCTCACCTCAAAATGTGTCTGCAAACTATGGGTTAGCTTCTGGACTCCTTGCTTGGTCAAAGGAATGTATGAATATGGGTGCATTTAGGTGGGGAGC TTCATTGTTAGAGGATGCGTGCAAGGTTGCCGATAAAATTGCTCAGCTGGCTGGAAATTTTTCATGTATCTGGAAATTGCATGGTGACATTCAGCTTAAC TACGCAAAGTGTTTTCCATGGATGGAAGATGACCAGAGTGTAGAATTTGATGTTGAGACTTTCCATGCTTCCATCCTTACCTGGAAGCAAACTTGCTATT TAGCCTCCACATTTGCCAAAAGGTCGTACCAACGTGCTCTGCACTTGGCTCCATGGCAAGCCAACCTTTATATTGACATTGGAATTGCTTCAGATCTCAT TTCTTCTATGAATGAGAATTATGGGCACGACCAGCATCCTTGGCAGCTATCGGAAAAGATGGTTCTGGGGGCCTTGTTACTCGAGGGTGACAATTATGAG TTCTGGGTGGCACTGGGATGTTTATCTGGTCATAATGCCTTGAGACAGCATGCCTTGATCAGGGGATTGCAATTGGATGTCTCCTTAGCTGTTGCTTGGG CATATCTTGGGAAGCTTTACAGAGAAGAAGGAGAGAAGAACTTGGCAAGGTTGGCATTTGATTGCAGCAGAAGTATAGATCCTTCACTTTCATTGCCATG GGCAGGCATGTCAGCTGATAGTCAAATTAGGGAGTTGACACCAGAGGAGGCTTTCGAGAGCTGTTCACGAGCTGTGCAGATACTTCCTGTCGCAGAGTTC CAAATTGGTCTTGCTAAACTTGCTTTGATTTCAGGGAGCCTTGCGTCTTCACAGGTTTTTGGAGCCATCCGGCAGGCAGTCCAGAAAGCCCCTCACTATC CCGAAACTCATAACTTGCATGGTCTAGTTTGTGAGGCACGATCTGAGTATCAGGCTGCTATTACTTCGTTTCGTCTAGCACGCTGTGCAATCAACATTTC TTCAGGTGACACATCAAAATCTCGTTTCCAAGAGATAGCAGTTAATTTGGCACGATCTCTGAGTAAGGCTGGGTATGCTGCTGATGCTGTACAAGAATGT GAAAGTTTGAGAAAAAAAGGTATGCTTGATTCAGAAGGTATGCAGATATATGCTTTCTGTTTATGGCAACTTGGTGAGAATGACCATGCGCTCTCTGTGG TAAGAAATCTGGCTTCCAGTGTTTCAGCAATGGAACAGGCACTTGCAGCAGCTTCTGTTAGTTTTATCTGCAGAATGCTGTATTACATTTCTGGACTGGA TTTGGCAGTTTCCAGCATTCTGAAAATGCCAAAAGAATTTCTCCAGAGTACAAAAGTCTGGATTGTAGCATCTGCCATTCATGCTCTTGATCACAGTAAT CGGCTTGCACAGGCTGTTTCAAACAGTCACTACTCTCTTTTATCCCACGATGAGATCATTGAAAAACACTATTTAACAGCTCTTGCTAAGCTGGTTAAAC ATGGATCAGATTATTGCCTTGGATTTCAGAGTGGAATTAGCCACATTAAAAAAGCTCTTCACAGTTACCCCAATAGTAATTTGCTTAGGAATCTACTCGG TCATCTTTTGCTATCATGTGAAGAATGGAAAGAAACTCATGTAGCTAGTAGGTGCTGCGTCACAGAAGCTCCTAACTGTGCAAGCAAGCAAGGTTTAAAG TCAGGATGTGAAATTCTTGGTGCTGGGGCAGTTGCTTGCTATGCAATTGGCAATAAAGATCCAAAATTTTCTTACCCGGCATGTGGTTATCAATGCCTTA ATGGACCTGGAGCTGTCCAAGAACTTCAGAAATACATGCGCCAAGAACCTTGGAACCATAGGGCTCAATACTTGCTTATACTTAATCTTCTACAGAAGGC TCGGGAAGAGAGATTCCCTAGCAAAATTTGTGCCATACTTGAGCGTTTAATTTTGGTGGCACTTTCCAATGAGTTCTATTCAAGAGAAAGCATGTCTTAT CAATATCAAAAGTTTCAGCTTTTGCTTTGTGCTTCTGAGATCAGTTTGCAAGGTGGAAATATAGCAGGCTGTATCAAACATGCTAAAAATGCTTCATCAC TTTTGCTTCCTAATAACTACCTGTTTTTTGGACACTTGCTGCTATGTCGTGCCTATGCTGCAGTGGATGATTATACAAACCTCCAGCAACAGTTTATAAG ATGCCTAGAACTGAAGACAGATTATAATATAGGGTGGATGTGTCTTAAAATTATTGAATCTCTGTATAACGTGGAAAGTGATTCAAAAATCTCAGTGTTG AGCCTCAAGGAATGCTCAAAAGAGTGGAAGAATTCATGGAATATGTGGATAGCTGTATTTAATTTGGTTCTGGGATTAATATCTTTATGGAAGGAGGAGT ACTTTTCAGCTGAAGAATCCCTTGTGCAAGCTTGTTCGCTGGCCAGTTCTGAGAGCTGCCTTTTTCTCTGCCATGGTGTCGCATGTATAAAGCTTGCCAG ACAGTTTTGTAGCTCTGATTACTTATCTCTTGCTGTAAGTAGCCTCACCAGTGCTCATGCAACTTCTACCATCCCCTTGCCTATTGTATCGTTACTGTTA GCACAAGCAGAAGGGAGCCTTGGCTTAAAGCAAAATTGGGAGAAGAACCTCCGCTTTGAATGGTATTCTTGGCCACCAGAAATGAGACCTGCAGAACTCT TCTTTCAAATGCATTTGCTTTCAATACAATCAGAAGCTGGGTTTAAAACTCCATCCACGGTGGAATTATGTCAAAGCCCACTTAAATGGGTTCTTCGGGC AATCCATACAAATCCGTCTTCTTTGAGATATTGGAACATCCTGCGTAAGCTTATGGAATGA
AA sequence Show only first row Show all	>Potri.002G001700.1 pacid=42779984 polypeptide=Potri.002G001700.1.p locus=Potri.002G001700 ID=Potri.002G001700.1.v4.1 annot-version=v4.1 MLKSGEEQEEDLEKQRAAVVELRELEKSVEANPDDPSLRFNLAVYLWERCECKEKAAEHFVVAVKLNPQNATAFKYLGHYYYEKEKVRALKCYQRAVSLN PDDSQSGDALCDILDQTGKETLELSLCTEASQKSPRAFWAFRRLGYIHLHHNRCSEAVHTLQHAIRGFPTSPDLWEALGLAYQKLGMYTAATKSYGRAIE LEDRRVFALIQSGNIFLTLGNFRKGVEQFQRALEISPQNVSANYGLASGLLAWSKECMNMGAFRWGASLLEDACKVADKIAQLAGNFSCIWKLHGDIQLN YAKCFPWMEDDQSVEFDVETFHASILTWKQTCYLASTFAKRSYQRALHLAPWQANLYIDIGIASDLISSMNENYGHDQHPWQLSEKMVLGALLLEGDNYE FWVALGCLSGHNALRQHALIRGLQLDVSLAVAWAYLGKLYREEGEKNLARLAFDCSRSIDPSLSLPWAGMSADSQIRELTPEEAFESCSRAVQILPVAEF QIGLAKLALISGSLASSQVFGAIRQAVQKAPHYPETHNLHGLVCEARSEYQAAITSFRLARCAINISSGDTSKSRFQEIAVNLARSLSKAGYAADAVQEC ESLRKKGMLDSEGMQIYAFCLWQLGENDHALSVVRNLASSVSAMEQALAAASVSFICRMLYYISGLDLAVSSILKMPKEFLQSTKVWIVASAIHALDHSN RLAQAVSNSHYSLLSHDEIIEKHYLTALAKLVKHGSDYCLGFQSGISHIKKALHSYPNSNLLRNLLGHLLLSCEEWKETHVASRCCVTEAPNCASKQGLK SGCEILGAGAVACYAIGNKDPKFSYPACGYQCLNGPGAVQELQKYMRQEPWNHRAQYLLILNLLQKAREERFPSKICAILERLILVALSNEFYSRESMSY QYQKFQLLLCASEISLQGGNIAGCIKHAKNASSLLLPNNYLFFGHLLLCRAYAAVDDYTNLQQQFIRCLELKTDYNIGWMCLKIIESLYNVESDSKISVL SLKECSKEWKNSWNMWIAVFNLVLGLISLWKEEYFSAEESLVQACSLASSESCLFLCHGVACIKLARQFCSSDYLSLAVSSLTSAHATSTIPLPIVSLLL AQAEGSLGLKQNWEKNLRFEWYSWPPEMRPAELFFQMHLLSIQSEAGFKTPSTVELCQSPLKWVLRAIHTNPSSLRYWNILRKLME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	0	1
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.011G165200 [exp]	5.74	0.7428
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	6.08	0.7485
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	6.78	0.7453
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.012G054200 [exp]	9.21	0.6756
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	11.66	0.7409
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	13.00	0.6858
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	17.32	0.7057
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	19.89	0.6442
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.013G161200 [exp]	20.17	0.6493
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	22.24	0.6382

Compare expression of checked genes

Potri.002G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.