Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) AT1G21060 402 / 3e-135 Protein of unknown function, DUF547 (.1.2) AT1G43020 316 / 1e-102 Protein of unknown function, DUF547 (.1.2.3.4) AT5G66600 307 / 3e-97 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 241 / 3e-71 Protein of unknown function, DUF547 (.1) AT3G18900 214 / 1e-62 unknown protein AT5G47380 206 / 9e-59 Protein of unknown function, DUF547 (.1) AT1G16750 150 / 5e-39 Protein of unknown function, DUF547 (.1) AT3G13000 148 / 3e-38 Protein of unknown function, DUF547 (.1.2) AT2G39690 145 / 8e-38 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033100 [exp] 330 / 6e-106 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 311 / 8e-99 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 300 / 3e-94 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 298 / 2e-93 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 202 / 2e-57 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.010G202900 [exp] 142 / 3e-36 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 141 / 1e-35 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 138 / 8e-35 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.006G216800 [exp] 137 / 2e-34 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022480 [exp] 332 / 3e-106 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 328 / 5e-105 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 204 / 1e-56 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10040507 [exp] 169 / 8e-47 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 153 / 1e-39 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016114 [exp] 135 / 3e-36 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10034787 [exp] 142 / 6e-36 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10021450 [exp] 142 / 1e-35 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1) Lus10037293 [exp] 137 / 2e-34 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 137 / 2e-34 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.002G001900.8 pacid=42776915 polypeptide=Potri.002G001900.8.p locus=Potri.002G001900 ID=Potri.002G001900.8.v4.1 annot-version=v4.1 ATGTCCGGTCCTGATAGGCGCTCTTTCTCTTCTTCTTGTCCCTCTATTTCACATCCGAGCTCCTCAAGTGTCCCAGACAGTGATATGCTTAACGGAGTGC TGAACATGTCACCCAAACTGTCCTCTCTTTCGAATTCTATTGCAAAGTTGGAGATCACAGTGTCTCGCGAGGCTTCACTGAATTGGGATTCTGAGAACAC AGTGGGTTGTAGTTCCATCATATCTATTCCTAGCGATCACACTCCAACGCCAAAGTCTTCTGCTGTACTGAGGAAGGAGATTGCCACACTTGAGGCTGAA ATATTGCATCTGGAGCGTTATCTTCTTTCACTGTATCGTACAGCTTTCAATGAGCAGCTACCTGCTTTATCAAATGTGACTAAAAACCATTTGCAATACA AGACAGGATCGCCATTACAAGTTCAATCGCCACACAACTTAAAAGTACATCAACAGACGGGTGATATTATCCACCATGATCAAAGTTCCCCTGCACATGG TTGGTCAGGACCGTATAGTCAGAGTTGCACTGCTAGCTTACAGTCAACATCTACAAGGGAGCAGAAGAATGTTGATTCTGGTCGTCACAGCCTTGCAGAT CACCTCCGTGCTTCTTGCTTGGTTAACGATCTTGGCATTCCTGATAGACTCTCTGAAGACATTGTGAGATGCATATCTTCCATTTACTGCAGACTTTGCA ACCCCCTTCATAGCCAATTAGGCTTGGCAGCTTCTCCTACTTCATCCCTGTCATCCTCTAGTATATTTTCCTCTCGCAACCCTTCTGATAACTGGAGTCC GCATTGCAATGGAGATGCTATGTTTCAGCGTCAACTTCAAGGGTTGAAAGGAGAGAGCGGACCATATGATACAATGCTTGAAGTTCTGAACATTTATCTA GATGATGCTAGTTTCAATTATGCTGCCACCATGCTAAAAAATTTCAGGTCACTGGTTCAAAGGCTTGAGAAGGTGGATCCAAGGAAGTTGAAGCGTGAAG AGAAGCTTGCGTTTTGGATTAACATTCACAATGCCTTGGTCATGCATGCATATTTAGCATATGGGACACATAATCGGGTGAAAAGTGCATCCATTTTGAA GGCAGCATACAATGTGGGTGGACAATGCATCAATGCGTGCGTTATACAAAGCTCCATCTTGGGTATTCGGTCACACTACTCAGAACCATGGCTACAAGCA TTGTTTTCTCCAGGAAGGAAATCCAAGACAGGGAATATCAGACATGTCTATGCCTTGGAATACCCAGAGCCACTCGTTCATTTTGCGCTTTGTTCAGGGG CATATTCTGATCCAGCAGTTCGAGTTTACACAGCAAAGAGTATCTTTCAGGAACTCAAGGTTGCTAAAGAAGAGTTCATTCAATCCAAAGTTTACGTGCA CAAGGAGTCAAAGATTTTCCTACCAAAAATACTCTGGTACTTTGGGAAGGACATGTCAATAGACGCGGATGGGGTGATTGAGGTGATAAGTGAGTGCCTG ACAGAAGGGCAACTGAAGGCTATGAGGAAATGCACGAGGGGGAAGGCTAACAAGAGCATCCATTGGTTGTCGCAAAGCTCATCTTTTCGGTATGTGATCC ATGGAGAATTAGCAAAAGGGAGAACAATGGTCTGA
AA sequence Show only first row Show all	>Potri.002G001900.8 pacid=42776915 polypeptide=Potri.002G001900.8.p locus=Potri.002G001900 ID=Potri.002G001900.8.v4.1 annot-version=v4.1 MSGPDRRSFSSSCPSISHPSSSSVPDSDMLNGVLNMSPKLSSLSNSIAKLEITVSREASLNWDSENTVGCSSIISIPSDHTPTPKSSAVLRKEIATLEAE ILHLERYLLSLYRTAFNEQLPALSNVTKNHLQYKTGSPLQVQSPHNLKVHQQTGDIIHHDQSSPAHGWSGPYSQSCTASLQSTSTREQKNVDSGRHSLAD HLRASCLVNDLGIPDRLSEDIVRCISSIYCRLCNPLHSQLGLAASPTSSLSSSSIFSSRNPSDNWSPHCNGDAMFQRQLQGLKGESGPYDTMLEVLNIYL DDASFNYAATMLKNFRSLVQRLEKVDPRKLKREEKLAFWINIHNALVMHAYLAYGTHNRVKSASILKAAYNVGGQCINACVIQSSILGIRSHYSEPWLQA LFSPGRKSKTGNIRHVYALEYPEPLVHFALCSGAYSDPAVRVYTAKSIFQELKVAKEEFIQSKVYVHKESKIFLPKILWYFGKDMSIDADGVIEVISECL TEGQLKAMRKCTRGKANKSIHWLSQSSSFRYVIHGELAKGRTMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	0	1
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	3.46	0.8127
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	4.58	0.8383
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	5.47	0.8302
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	5.47	0.8095
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	8.36	0.8006	CLE12.1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	9.79	0.8193	VLN1.1
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	10.09	0.7769
AT4G02010			Protein kinase superfamily pro...		Potri.014G119100 [exp]	10.24	0.7475
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	11.40	0.7903
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	13.41	0.7407

Compare expression of checked genes

Potri.002G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.