Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) AT1G76590 354 / 5e-125 PLATZ transcription factor family protein (.1) AT1G43000 259 / 6e-88 PLATZ transcription factor family protein (.1) AT1G32700 230 / 2e-76 PLATZ transcription factor family protein (.1.2) AT4G17900 228 / 2e-75 PLATZ transcription factor family protein (.1.2) AT5G46710 188 / 6e-60 PLATZ transcription factor family protein (.1) AT2G27930 159 / 7e-49 PLATZ transcription factor family protein (.1) AT1G31040 132 / 1e-37 PLATZ transcription factor family protein (.1) AT2G12646 124 / 1e-34 PLATZ transcription factor family protein (.1) AT3G60670 112 / 3e-30 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259000 [exp] 481 / 2e-175 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 234 / 6e-78 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 232 / 5e-77 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 232 / 5e-77 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 218 / 1e-71 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 206 / 2e-67 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 200 / 7e-65 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.001G212400 [exp] 200 / 1e-64 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 197 / 1e-63 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000952 [exp] 380 / 6e-135 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 376 / 6e-133 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 347 / 3e-122 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 344 / 3e-119 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 232 / 8e-77 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 232 / 3e-76 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 229 / 9e-76 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 215 / 2e-70 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 212 / 4e-69 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 210 / 5e-68 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [poplar] [flax] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Potri.002G002200.1 pacid=42777753 polypeptide=Potri.002G002200.1.p locus=Potri.002G002200 ID=Potri.002G002200.1.v4.1 annot-version=v4.1 ATGGTGAGTCCATTTGGGCAAATGAGGAACCACGACACGGGTCCACCATGGTTAATACCCATGCTTAGAGCAAGCTATTTCATTCCCTGTGCAGTTCATG GTGAATCCAATAAGAGTGAATGTAATATGTTCTGCTTAGATTGTATGGGAAATGCTTTCTGTTCTTATTGTCTTATTTATCACAGAGATCACCGTGTTGT TCAGATAAGGCGATCTTCATACCATAATGTGGTGAGAGTAAATGAGATACAGAAGTACATAGACATATCATGCGTACAGACTTACATCATCAATAGCGCC AAGATTGTGTTCCTCAATGAGCGCCCTCAGCCAAGGCCTGGAAAGGGGGTCACCAACACTTGTGAAATTTGTTGTCGAAGTCTCCTTGATTCATTCAGAT TCTGTTCACTTGGATGCAAGCTGGGAGGCATGAAGCGGGGTGACCCAGACCTTACGTTTGCGCTAAAATTGAAGCAAAATAGGGATCCGTTCTTTGGTGG GTCGGAATCAGATGAGTCCTCAACCCCAAAGAAGATTCGCAGAACACATGCTTTCAATCGTTTGATGGACGGGCTCTCAATCTATTCCTCCAACAATGAT GGTGCGGAGAGCTCTGGTGATGATGCAGCTACCAACATTTCTCCGGCTACTCCTCCCCTTTTCAATCATCGTAATGCAAGGAGAAGAAAGGGTATACCTC ATCGTGCCCCATTTTAA
AA sequence Show only first row Show all	>Potri.002G002200.1 pacid=42777753 polypeptide=Potri.002G002200.1.p locus=Potri.002G002200 ID=Potri.002G002200.1.v4.1 annot-version=v4.1 MVSPFGQMRNHDTGPPWLIPMLRASYFIPCAVHGESNKSECNMFCLDCMGNAFCSYCLIYHRDHRVVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSA KIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKLGGMKRGDPDLTFALKLKQNRDPFFGGSESDESSTPKKIRRTHAFNRLMDGLSIYSSNND GAESSGDDAATNISPATPPLFNHRNARRRKGIPHRAPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21000			PLATZ transcription factor fam...		Potri.002G002200 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.013G045000 [exp]	1.00	0.9157
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.013G107500 [exp]	6.32	0.8728
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	7.14	0.9032
AT5G55210			unknown protein		Potri.001G356400 [exp]	8.71	0.9146
AT2G15270			unknown protein		Potri.001G300300 [exp]	14.38	0.8500
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	17.20	0.9026
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	21.07	0.8486
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	23.04	0.8877
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103400 [exp]	23.74	0.8426
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.010G203400 [exp]	25.21	0.8570

Compare expression of checked genes

Potri.002G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.