Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20980 970 / 0 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 872 / 0 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G60030 299 / 3e-86 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT2G47070 287 / 2e-82 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT5G18830 125 / 4e-29 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT1G53160 98 / 3e-23 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G02065 101 / 5e-23 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT2G33810 94 / 2e-22 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT5G50670 100 / 3e-22 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 100 / 3e-22 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G258700 [exp] 1667 / 0 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G188700 [exp] 307 / 1e-88 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.014G114300 [exp] 304 / 1e-87 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.010G154000 [exp] 303 / 5e-87 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G098600 [exp] 301 / 3e-86 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G197000 [exp] 123 / 2e-28 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.010G026200 [exp] 119 / 3e-27 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.003G169400 [exp] 109 / 8e-26 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G058600 [exp] 108 / 6e-25 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 276 / 8e-78 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 265 / 6e-74 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 149 / 3e-36 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10010071 [exp] 143 / 2e-34 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10033993 [exp] 115 / 5e-26 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10012782 [exp] 111 / 1e-24 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10015764 [exp] 104 / 2e-23 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 100 / 9e-23 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 103 / 1e-22 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 100 / 1e-22 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.002G002400.8 pacid=42777064 polypeptide=Potri.002G002400.8.p locus=Potri.002G002400 ID=Potri.002G002400.8.v4.1 annot-version=v4.1 ATGGAAGAGGTGGGTGCGCAAGTAGCTGCTCCCATATTCATTCATGAAGCACTTTCTAGTAGATACTGTGATATGACTTCCATGGCAAAAAAACATGATC TTTCTTACCAGTCTCCCAATTCTCAGCTCCAACAACATCAGTTTCTTCAGGCTTCTAGGGAAAAAAACTGGAATTCCAAGGCATGGGATTGGGATAGTGT CGGTTTTGTTGCTAAACCTTCTGTAGCTGCTGAAACTTTACGGCTGGGAACTGTTTCTAGAGAACCTAAGAAAAAAGATAAGAGTGATTCCAAAAACAAA TCCAATTCTGTTAATGAAGATGATGATGGTCTTGGCTTGAATCTAGGTGGGAGTTTGACTTCTGTTGAGGAGCCTGTGTCAAGACCCAACAAGAGGGTCA GGTCTGGATCACCCGGTAATGGTAGTTATCCAATGTGTCAGGTTGATAACTGCAAGGAAGATCTATCAAAAGCTAAGGACTATCACCGCCGACATAAAGT GTGCCAGGTTCATAGTAAAGCCACAAAAGCCCTGGTGGGAAAACAGATGCAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATCCTCTCACTGAATTCGAT GAGGGAAAGAGAAGTTGTAGACGTAGGCTTGCAGGGCACAACCGACGAAGAAGGAAAACCCAGCCTGAGGATGTAACCTCACGGCTGCTACTCCCTGGAA ACCCGGATATGAACAATAATGGAAACTTGGATATTGTAAACTTGTTAACTGCTTTGGCTCGCTCACAAGGGAGGAATGATGATAAAAGTACAAACTGCCC AACAGTACCAGATAAAGACCAACTCATCCAGATTCTTAACAAAATAAATTCACTGCCTTTGCCAATGGATCTTGCTGCAAAGTTATCAAATATTGCAAGT TTAAATGTGAAAAACCCCAACCAACCTTATTTAGGACATCAAAACAGATTGAATGGAACTGCATCTTCTCCATCAACCAATGACTTACTTGCTGTTCTTT CAACCACTTTGGCAGCATCTGCTCCAGATGCTCTTGCAATTTTATCTCAAAGAAGCAGTCAGAGCAGTGACAATGACAAGTCTAAGTTGCCTGGCCCCAA TCAAGTGACTGTTCCCCATTTGCAGAAAAGATCTAATGTAGAGTTTCCTGCTGTGGGCGTTGAGAGAATTAGTCGCTGTTACGAGTCTCCTGCTGAAGAT TCAGATTACCAGATTCAAGAATCTCGTCCTAACCTACCATTACAACTGTTTAGCTCATCACCTGAGAATGAGAGCCGTCAAAAACCAGCATCTTCTGGGA AATATTTTTCTTCTGACAGCAGTAATCCCATTGAAGAGAGGTCTCCATCATCATCCCCTCCTGTTGTGCAGAAGTTGTTCCCATTGCAGAGCACCGCAGA AACTATGAAATCAGAAAAGATGTCAGTCAGCAGAGAGGTTAATGCAAATGTTGAAGGTGACAGAAGTCATGGCTGTGTTTTGCCGCTTGAGCTCTTTAGA GGGCCAAACAGAGAACCTGACCACAGTTCATTTCAAAGTTTCCCATACCGAGGAGGATATACATCTTCCTCTGGGTCTGATCATTCACCTTCTAGTCAGA ATTCTGATCCTCAGGATCGGACTGGGCGAATAATTTTTAAACTATTTGACAAGGATCCCAGTCATTTCCCTGGGACATTACGCACAAAGATATACAATTG GCTATCTAACAGTCCATCAGAAATGGAGAGTTATATAAGGCCTGGCTGTGTTGTTCTATCAGTTTATTTGTCAATGCCATCTGCTTCCTGGGAGCAACTT GAAAGAAACCTGCTTCAGCTAGTGGATTCTTTGGTTCAAGATTCAGATTCTGATTTATGGAGAAGTGGAAGGTTTTTATTAAATACTGGCAGGCAGCTAG CATCACATAAAGATGGAAAAGTTCGTTTGTGCAAATCTTGGAGAACATGGAGTTCCCCAGAGTTAATATTAGTATCCCCAGTGGCAGTTATTGGTGGGCA AGAAACCTCTCTTCAGTTAAAGGGAAGAAATCTTACTGGTCCTGGCACCAAGATTCATTGCACTTACATGGGAGGATACACATCAAAGGAAGTTACAGAT TCTTCTTCTCCAGGATCCATGTATGATGAGATAAATGTGGGTGGTTTCAAAATTCATGGTCCATCTCCTAGTATTTTAGGTCGTTGTTTCATTGAGGTAG AAAATGGTTTCAAGGGCAACAGTTTTCCTGTGATAATAGCTGATGCTTCCATCTGTAAAGAATTGAGGCTCCTTGAATCTGAGTTTGATGAAAACGCTGT AGTCAGCAATATTGTTTCAGAAGAACAGACTCGTGATTTGGGGCGACCTAGATCAAGGGAGGAAGTTATGCATTTCTTAAACGAGCTTGGATGGCTGTTC CAAAGGAAGAGCATGCCTTCTATGCATGAGGCTCCAGATTATTCACTTAACCGCTTCAAGTTTCTGCTCATTTTCTCAGTTGAAAGAGATTATTGTGTGT TGGTCAAAACAATTCTGGACATGCTGGTAGAAAGAAATACGTGTAGGGATGAATTATCCAAGGAGCATTTGGAGATGCTCTATGAGATTCAGCTCTTGAA CCGGTCAGTGAAAAGGAGGTGCAGGAAAATGGCAGACTTGCTTATTCATTATTCTATTATTGGCGGTGATAATTCCTCTAGAACATATATTTTCCCACCA AACGTTGGGGGACCTGGTGGCATTACACCTTTACATTTGGCTGCTTGTGCATCGGGTTCAGATGGTTTGGTTGATGCCCTGACAAATGACCCACATGAGA TTGGGCTGTCCTGCTGGAACTCTGTCCTGGATGCAAATGGCCTGTCTCCATATGCTTATGCTGTCATGACAAAAAACCACTCTTATAACTTATTAGTGGC TCGTAAACTTGCTGACAAAAGAAATGGCCAAATTTCTGTGGCAATTGGAAATGAGATAGAACAGGCAGCCTTGGAGCAAGAACATGTGACAATATCACAG TTTCAGCGAGAGCGTAAATCCTGTGCTAAGTGTGCAAGTGTGGCAGCTAAGATGCATGGGAGGTTTCTGGGTTCACAAGGCTTGCTTCAGCGTCCATATG TCCATTCAATGCTTGCTATCGCTGCTGTCTGTGTTTGTGTCTGCCTCTTCTTCCGGGGTGCACCAGACATTGGCTTAGTTGCTCCCTTCAAATGGGAGAA TTTGAATTATGGAACCATTTAG
AA sequence Show only first row Show all	>Potri.002G002400.8 pacid=42777064 polypeptide=Potri.002G002400.8.p locus=Potri.002G002400 ID=Potri.002G002400.8.v4.1 annot-version=v4.1 MEEVGAQVAAPIFIHEALSSRYCDMTSMAKKHDLSYQSPNSQLQQHQFLQASREKNWNSKAWDWDSVGFVAKPSVAAETLRLGTVSREPKKKDKSDSKNK SNSVNEDDDGLGLNLGGSLTSVEEPVSRPNKRVRSGSPGNGSYPMCQVDNCKEDLSKAKDYHRRHKVCQVHSKATKALVGKQMQRFCQQCSRFHPLTEFD EGKRSCRRRLAGHNRRRRKTQPEDVTSRLLLPGNPDMNNNGNLDIVNLLTALARSQGRNDDKSTNCPTVPDKDQLIQILNKINSLPLPMDLAAKLSNIAS LNVKNPNQPYLGHQNRLNGTASSPSTNDLLAVLSTTLAASAPDALAILSQRSSQSSDNDKSKLPGPNQVTVPHLQKRSNVEFPAVGVERISRCYESPAED SDYQIQESRPNLPLQLFSSSPENESRQKPASSGKYFSSDSSNPIEERSPSSSPPVVQKLFPLQSTAETMKSEKMSVSREVNANVEGDRSHGCVLPLELFR GPNREPDHSSFQSFPYRGGYTSSSGSDHSPSSQNSDPQDRTGRIIFKLFDKDPSHFPGTLRTKIYNWLSNSPSEMESYIRPGCVVLSVYLSMPSASWEQL ERNLLQLVDSLVQDSDSDLWRSGRFLLNTGRQLASHKDGKVRLCKSWRTWSSPELILVSPVAVIGGQETSLQLKGRNLTGPGTKIHCTYMGGYTSKEVTD SSSPGSMYDEINVGGFKIHGPSPSILGRCFIEVENGFKGNSFPVIIADASICKELRLLESEFDENAVVSNIVSEEQTRDLGRPRSREEVMHFLNELGWLF QRKSMPSMHEAPDYSLNRFKFLLIFSVERDYCVLVKTILDMLVERNTCRDELSKEHLEMLYEIQLLNRSVKRRCRKMADLLIHYSIIGGDNSSRTYIFPP NVGGPGGITPLHLAACASGSDGLVDALTNDPHEIGLSCWNSVLDANGLSPYAYAVMTKNHSYNLLVARKLADKRNGQISVAIGNEIEQAALEQEHVTISQ FQRERKSCAKCASVAAKMHGRFLGSQGLLQRPYVHSMLAIAAVCVCVCLFFRGAPDIGLVAPFKWENLNYGTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	0	1
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	2.00	0.8695	LON.1
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	2.44	0.8578
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027800 [exp]	4.00	0.8311
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	6.92	0.8206
AT2G16485			nucleic acid binding;zinc ion ...		Potri.005G117300 [exp]	9.16	0.8152
AT1G68580			agenet domain-containing prote...		Potri.010G126700 [exp]	9.79	0.7891
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	10.95	0.8254
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	11.53	0.8217
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.010G006800 [exp]	12.36	0.7689	RAP2.3,ERF34
AT5G16120			alpha/beta-Hydrolases superfam...		Potri.017G114800 [exp]	12.96	0.8161

Compare expression of checked genes

Potri.002G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.