Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33560 459 / 2e-161 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT5G05510 105 / 9e-25 Mad3/BUB1 homology region 1 (.1) AT2G20635 85 / 1e-17 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G258300 [exp] 708 / 0 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.008G071900 [exp] 107 / 4e-25 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.010G185500 [exp] 106 / 8e-25 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.007G139000 [exp] 79 / 1e-15 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013199 [exp] 488 / 7e-173 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 482 / 1e-170 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10009836 [exp] 102 / 1e-23 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10040947 [exp] 100 / 2e-22 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10017714 [exp] 70 / 1e-12 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10033673 [exp] 69 / 2e-12 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [poplar] [flax] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Potri.002G002900.4 pacid=42776832 polypeptide=Potri.002G002900.4.p locus=Potri.002G002900 ID=Potri.002G002900.4.v4.1 annot-version=v4.1 ATGGATCCAGAGACGGAGTTTCTCGCATCAAAACAAGAGACGGGTAACGAGTGGGAACTGTTCAAAGAAAATGTAAGACCCTTGAAAAGAGGCCGCAATG TTGGCCTCTTGAATCAAGCCCTCAAATATCACTCAGAATATCAACTCAAGAGATCTCTCCTGGATACCCGAAGGAAGTTGATCGAAGCTATTGATGAGTA CGAAGGGGATGACCCTCTCTTGCCATGGATCGAGTGTATAAAATGGGTTCAAGAGGCATTCCCACAAGGAGGAGACAGCTCAGGCCTCATACTCATATAC GAACAATGTGTGCGTGCCTTTTGGCATTCCGACCGGTACAAGGATGATCTCCGTTACCTCAAAGTTTGGTTAGAATACGCTGAAAACTGTGTTGATGCAG AAGTCATTTACAGTTTTCTTGATGCAAATGAAATTGGCAAGTCACAGTCTGCCTATTACCTTGCATATGCTTTGCATATGGAATCCAAGTCTAAGATGAA AATTGCAAATGACATTTTCAATCTTGGGATATCTAGGGATGCTCAACCAATAGAAAAATTGAAGGATGCCTACAGGAAGTTTCTTATTAGATCAATGACA AAACCAAAAGTTGTGGAGGATGACGGTGGAGAAAGTCACTTACCAGTCCGAAGCTTTGGAACTGTCTTGTCCAGCGCAGATAATCGGAGGCAAAATATGG AGAGATCCGAACTTGCAAATAAACAAATGAAGCCGGACAGGACTCAGAAGATCCCCCTTTCTATTTTCAAAGACACAACAAATATTGATGCCATGCCAGG ACATCAATCAGTTAAGGCCAAGCCAGAGTTGAATCCTTGGAGCACTCTTGGAGCTCGAGAAGAGAGAAACAAAGAAAATAGTGCAGTGCCTACCAAATGG ACAACATACAAGATTCCGCAGAGACCTGGAGCTAGATCTGGAGGGGTAACTGCAGGTGCCTCCATTGAAGTGTTTGTTGACGAGGAATGTTCCAAAAAGG TTAGAGCACATGATCACGATGGCATGTCTTCGACATTGAGGCTGAGACAGGGGGACGTCCTAGACATTAAGAAGGAAACAGATCTCTTAAGGGAGAACCC ACTAAGGAATTTTCCTTTGCGTAGCCTCCCTAGAATCTGGAAGTTCAAAGGAGGGAGCTTGTGGAGTTCTCGGGAGGACCTGGCAAACGGATGCAATCTT GATTGA
AA sequence Show only first row Show all	>Potri.002G002900.4 pacid=42776832 polypeptide=Potri.002G002900.4.p locus=Potri.002G002900 ID=Potri.002G002900.4.v4.1 annot-version=v4.1 MDPETEFLASKQETGNEWELFKENVRPLKRGRNVGLLNQALKYHSEYQLKRSLLDTRRKLIEAIDEYEGDDPLLPWIECIKWVQEAFPQGGDSSGLILIY EQCVRAFWHSDRYKDDLRYLKVWLEYAENCVDAEVIYSFLDANEIGKSQSAYYLAYALHMESKSKMKIANDIFNLGISRDAQPIEKLKDAYRKFLIRSMT KPKVVEDDGGESHLPVRSFGTVLSSADNRRQNMERSELANKQMKPDRTQKIPLSIFKDTTNIDAMPGHQSVKAKPELNPWSTLGAREERNKENSAVPTKW TTYKIPQRPGARSGGVTAGASIEVFVDEECSKKVRAHDHDGMSSTLRLRQGDVLDIKKETDLLRENPLRNFPLRSLPRIWKFKGGSLWSSREDLANGCNL D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.002G002900 [exp]	0	1
					Potri.018G131900 [exp]	4.00	0.9524
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.006G236000 [exp]	5.29	0.9462
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.006G235901 [exp]	13.22	0.9302
AT3G55646			unknown protein		Potri.008G061700 [exp]	15.00	0.9404
AT5G37660		PDLP7	plasmodesmata-located protein ...		Potri.004G086000 [exp]	15.19	0.8956
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Potri.015G022300 [exp]	17.60	0.9231
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137550 [exp]	18.33	0.9088
AT5G12980			Cell differentiation, Rcd1-lik...		Potri.014G155500 [exp]	20.19	0.9079
					Potri.001G227750 [exp]	20.56	0.9439
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.001G114000 [exp]	21.81	0.9186

Compare expression of checked genes

Potri.002G002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.