Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76550 1033 / 0 Phosphofructokinase family protein (.1) AT1G20950 1031 / 0 Phosphofructokinase family protein (.1) AT1G12000 389 / 2e-128 Phosphofructokinase family protein (.1) AT4G04040 380 / 9e-125 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT5G56630 66 / 4e-11 PFK7 phosphofructokinase 7 (.1) AT4G26270 62 / 7e-10 PFK3 phosphofructokinase 3 (.1) AT4G29220 60 / 4e-09 PFK1 phosphofructokinase 1 (.1) AT5G47810 58 / 9e-09 PFK2 phosphofructokinase 2 (.1) AT4G32840 54 / 2e-07 PFK6 phosphofructokinase 6 (.1) AT5G61580 54 / 2e-07 PFK4 phosphofructokinase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257800 [exp] 1106 / 0 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015900 [exp] 384 / 3e-126 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 384 / 3e-126 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 372 / 6e-122 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 276 / 2e-87 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.010G106950 [exp] 81 / 1e-18 AT1G20950 87 / 2e-21 Phosphofructokinase family protein (.1) Potri.006G152600 [exp] 61 / 2e-09 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 59 / 4e-09 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G024500 [exp] 54 / 1e-08 AT1G20950 67 / 5e-14 Phosphofructokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025167 [exp] 1063 / 0 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10016047 [exp] 1063 / 0 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10038700 [exp] 315 / 5e-100 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1) Lus10037972 [exp] 208 / 5e-60 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) Lus10005488 [exp] 67 / 3e-11 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 66 / 3e-11 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 62 / 1e-09 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 61 / 2e-09 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 60 / 3e-09 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10035001 [exp] 57 / 4e-08 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.002G003100.2 pacid=42779717 polypeptide=Potri.002G003100.2.p locus=Potri.002G003100 ID=Potri.002G003100.2.v4.1 annot-version=v4.1 ATGGATTCCGATTTCGGCATCCCTAGAGAACTTTCCGATCTCCAAAAACTCCGATCTCTTTACCAGCCAGGACTCCCTCCCTGTCTTCAGGGAACTACCG TGAGGGTAGAATTTGGGGATGTAACCACATGTGCGGACCCGGCTGATGTCCACGCCATAAGCCGAGCCTTTCCCCACACCTATGGTCAGCCCTTGGCTCA CTTCCTCAGGGCAACTGCTAAAGTCCCTGATGCTCAGATTATAACCGACCATCCTGCTGTCAGGGTGGGAATAGTCTTCTGCGGGAGACAGTCTCCTGGA GGACATAATGTCGTATGGGGTCTTCAAAACGCTCTTAAAATCCATAATCCTAAAAGCACTTTACTTGGATTTCTAGGAGGTTCTGAAGGTTTTTTTGCTC AGAAAACACTTGAAATTACAGATGACATTCTTGAGACCTACAAAAATCAAGGCGGTTATGATTTGCTGGGACGGACAAAAGATCAAATAAGAACAACCGA ACAGGTTAGGGCAGCACTAACTGCATGCAAAGATTTGAAACTGGATGCCCTTGTTATCATTGGAGGAGTTACATCAAATACAGATGCTGCTCAGCTTGCT GAAACATTTGCTGTGGAAAAATGCCAAACAAAGGTGGTTGGTGTTCCTGTTACTTTAAATGGAGATCTCAAGAATCAATTCGTGGAAACCAATGTTGGTT TCGATACTATATGCAAGGTTAATTCCCAGCTCATCAGCAATGTGTGCACCGATGCTCTCTCTGCAGAGAAGTATTATTATTTCATCCGGCTCATGGGCCG AAAGGCATCTCATGTTGCTCTGGAATGCACACTTCAGTCTCATCCAAATATGGTTATTCTTGGTGAGGAGGTGGCTGCATCGAAGCTTACTCTTTTTGAC TTGACCAAAAAAATTTGTGATGCAGTCCAAGCACGAGCAGAGCAAGACAAGAATCATGGAGTCATTCTACTGCCAGAGGGACTCATAGAAAGCATTCCTG AGGTCTATGCTCTCTTGAAGGAAATACACAGTTTACTCAAGCAAGGTGTTGCTCCTGACAGCATTTCATCACAGCTTTCACCATGGGCATCTGCTTTACT TGAATTTTTGCCACCCTTTATCAAGAGAGAGCTGCTGCTTCATCCTGAATCAGATGACTCAGCACAGTTATCCCAGATTGAAACAGAGAAACTTCTAGCA CATCTTGTGGAGGCAGAAATGAACAGGCGGCTGAAAGAAGGGACATATAAGGGGAAGAAGTTCAATGCTATATGCCACTTTTTTGGTTATCAGGCCCGAG GGTCCTTACCATCGAAATTCGATTGTGACTATGCCTATGTTCTTGGGCACATCTGCTACCATATTTTAGCCGCTGGTTTGAATGGTTACATGGCCACAGT AAGTAACCTAAAGAATCCCTCGAACAAGTGGCGTTGTGGTGCTGCTCCTATTACAGCAATGATGACAGTGAAGCATTGGGCTCAAAGCCCTGGTGCATCT TCAATTGGAAAACCTGCTATTCATCCAGCTACAGTGGATTTGAAAGGCAAAGCATATGAGCTGCTGAGAGTAAATGCAGGAAGATTTTTGATGGAAGATC TGTACAGAAATCCAGGTCCCCTTCAATTTGATGGTCCTGGTGCTGATTCTAAGGCTGTATCTCTCTCTGTTGAAGACGCTGATTACATGGGCCGGATCAA GAAACTGCAGGAATACCTTGACAAGGTTAGAAACATTGTGAAACCAGGGTGCTCTCAGGATGTCCTGAAAGCTGCGTTGAGTGTCATGTCTTCTGTGACA GAAGTTCTCTCTGTGATGTCCTCAACCTCATCCAGTGGCCTAACAACCCTTTAA
AA sequence Show only first row Show all	>Potri.002G003100.2 pacid=42779717 polypeptide=Potri.002G003100.2.p locus=Potri.002G003100 ID=Potri.002G003100.2.v4.1 annot-version=v4.1 MDSDFGIPRELSDLQKLRSLYQPGLPPCLQGTTVRVEFGDVTTCADPADVHAISRAFPHTYGQPLAHFLRATAKVPDAQIITDHPAVRVGIVFCGRQSPG GHNVVWGLQNALKIHNPKSTLLGFLGGSEGFFAQKTLEITDDILETYKNQGGYDLLGRTKDQIRTTEQVRAALTACKDLKLDALVIIGGVTSNTDAAQLA ETFAVEKCQTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFD LTKKICDAVQARAEQDKNHGVILLPEGLIESIPEVYALLKEIHSLLKQGVAPDSISSQLSPWASALLEFLPPFIKRELLLHPESDDSAQLSQIETEKLLA HLVEAEMNRRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVSNLKNPSNKWRCGAAPITAMMTVKHWAQSPGAS SIGKPAIHPATVDLKGKAYELLRVNAGRFLMEDLYRNPGPLQFDGPGADSKAVSLSVEDADYMGRIKKLQEYLDKVRNIVKPGCSQDVLKAALSVMSSVT EVLSVMSSTSSSGLTTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76550			Phosphofructokinase family pro...		Potri.002G003100 [exp]	0	1
AT1G80610			unknown protein		Potri.001G313900 [exp]	4.00	0.6683
AT2G36460			Aldolase superfamily protein (...		Potri.006G165700 [exp]	6.32	0.7265
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.012G056800 [exp]	9.16	0.6694
AT5G65207			unknown protein		Potri.007G086000 [exp]	10.09	0.6882
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	18.97	0.6184
AT4G10270			Wound-responsive family protei...		Potri.019G117500 [exp]	20.34	0.6651
AT2G44310			Calcium-binding EF-hand family...		Potri.014G161200 [exp]	27.74	0.6537
AT2G30230			unknown protein		Potri.019G123900 [exp]	28.93	0.6553
AT4G35630		PSAT	phosphoserine aminotransferase...		Potri.005G099900 [exp]	29.10	0.6583
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.017G114500 [exp]	29.47	0.6521	LBD41.3

Compare expression of checked genes

Potri.002G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.