Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57710 264 / 1e-86 Protein kinase superfamily protein (.1) AT3G57750 252 / 3e-82 Protein kinase superfamily protein (.1.2) AT3G57730 249 / 1e-80 Protein kinase superfamily protein (.1) AT3G57700 245 / 2e-79 Protein kinase superfamily protein (.1) AT3G57720 240 / 3e-77 Protein kinase superfamily protein (.1) AT3G57740 210 / 2e-65 Protein kinase superfamily protein (.1) AT3G52530 207 / 2e-64 Protein kinase superfamily protein (.1) AT1G67470 201 / 7e-62 Protein kinase superfamily protein (.1) AT1G65250 197 / 2e-60 Protein kinase superfamily protein (.1) AT3G57770 179 / 2e-54 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G004900 [exp] 449 / 1e-159 AT3G57710 270 / 8e-89 Protein kinase superfamily protein (.1) Potri.013G020100 [exp] 226 / 1e-71 AT3G57710 203 / 2e-62 Protein kinase superfamily protein (.1) Potri.005G068000 [exp] 205 / 1e-60 AT3G57710 214 / 3e-63 Protein kinase superfamily protein (.1) Potri.014G148400 [exp] 167 / 5e-50 AT1G16260 330 / 5e-109 Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 169 / 2e-47 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G186100 [exp] 169 / 5e-47 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 168 / 8e-47 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185688 [exp] 167 / 8e-47 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185732 [exp] 164 / 1e-46 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004504 [exp] 169 / 1e-47 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 167 / 1e-46 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10013143 [exp] 151 / 1e-43 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10034085 [exp] 158 / 2e-43 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10012159 [exp] 151 / 2e-40 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014387 [exp] 149 / 3e-40 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10013385 [exp] 148 / 9e-40 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013384 [exp] 148 / 1e-39 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10020747 [exp] 144 / 8e-39 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10003063 [exp] 145 / 1e-38 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G003300.1 pacid=42778179 polypeptide=Potri.002G003300.1.p locus=Potri.002G003300 ID=Potri.002G003300.1.v4.1 annot-version=v4.1 ATGGCGAAGAGAAGGCAGAGCAAGATATTATTGGATCGTGGAAGTGAGTTATTGGAGGAAAGGATCAGATTTTGTGATGGTAGATGTAGATCAAATCCTA TCAGGAACTTCTCTGTTGATCAAATCTGCAGAGCCATACAAGACTTCCAAAAAATTCACCCCTTACAAAGCTGTATAGAATTTGAATGGAAAAAGGGAGT TCTAGATGGGCGTCTTGTTTTCATCAAGAGGTATGCAAGAGGCGGTCAAGAGGTCTACCGTGACATTGTGGTCTCGTCGCAGATGAGCAGTCACAACAAT GTTCTCAAGCTATTAGGTTGTTGTTTGGAGATCCCAGAAGGCCCAGCTCTAGTTTATGAATATCCAGAGAATCGAAGTCTGGATAGACATATTCATTATG GATCATTACCTTGGGGAACCAGATTGAAAATTGCCAAGGAAATTGCAAATGCCGTGGCATATCTCCACACTGCATTTCCCAGGCCCATCATCCACAGAGA CATAAAACCTGCAAATATCTTCCTCAACCAGAATTATGCTGCCAAGTTGTCCGATTTCTCTTTTTCCATATCAATTCCTGAAGGTGAATCGAAGGTTGGA GATGATCTTCTTGTTGGGACATTTGGTTTCTTGGACCCTGATTATACGATGACAAATTTTGTGACAGAGAAGACTGATGTCTTCAGCTTTGGGGTGCTGC TGCTCGTCCTTCTTACTGGACGAGCAACACGTCAAGGGGAAATCCATCTGATAGAGCATGTGAAACTCTTGGTTGAACAGGATCGGGTACATGAAGCTGT GGATCCTATGATTAGGGGAAACGGGGGAGAAGCAATTGATCAGCAACAACTGGAAGCATCCATTGAACTAGCCTTGAGATGCACCGATGATTCAGGAGAA GATAGGCCACTAATGATAGAAGTAGCAAAAGAAATCCAGCGAATTGAAAGATCCATCACTGCAGCTCCATAG
AA sequence Show only first row Show all	>Potri.002G003300.1 pacid=42778179 polypeptide=Potri.002G003300.1.p locus=Potri.002G003300 ID=Potri.002G003300.1.v4.1 annot-version=v4.1 MAKRRQSKILLDRGSELLEERIRFCDGRCRSNPIRNFSVDQICRAIQDFQKIHPLQSCIEFEWKKGVLDGRLVFIKRYARGGQEVYRDIVVSSQMSSHNN VLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVG DDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGE DRPLMIEVAKEIQRIERSITAAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57710			Protein kinase superfamily pro...		Potri.002G003300 [exp]	0	1
AT2G41475			Embryo-specific protein 3, (AT...		Potri.006G069800 [exp]	16.12	0.5818
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.012G138900 [exp]	16.91	0.5552
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Potri.019G062800 [exp]	18.30	0.5353
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.007G129500 [exp]	46.81	0.5112
AT5G04270			DHHC-type zinc finger family p...		Potri.010G226100 [exp]	48.06	0.5016
AT1G22540			Major facilitator superfamily ...		Potri.013G106925 [exp]	64.06	0.5033
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.014G042000 [exp]	153.61	0.4525
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090501 [exp]	173.46	0.4080
AT4G00910			Aluminium activated malate tra...		Potri.014G101200 [exp]	185.17	0.4125
AT1G26665			Mediator complex, subunit Med1...		Potri.001G083801 [exp]	195.09	0.4410

Compare expression of checked genes

Potri.002G003300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.