Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20925 500 / 3e-176 Auxin efflux carrier family protein (.1) AT1G76520 471 / 3e-166 Auxin efflux carrier family protein (.1.2) AT1G76530 399 / 2e-137 Auxin efflux carrier family protein (.1) AT5G65980 356 / 8e-121 Auxin efflux carrier family protein (.1) AT2G17500 347 / 3e-117 Auxin efflux carrier family protein (.1.2.3.4) AT1G71090 189 / 2e-55 Auxin efflux carrier family protein (.1) AT5G01990 184 / 1e-53 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456300 [exp] 462 / 2e-162 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 414 / 2e-143 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 405 / 1e-139 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 399 / 2e-137 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 392 / 8e-135 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 353 / 3e-119 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G125501 [exp] 272 / 3e-87 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 190 / 6e-56 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 181 / 1e-52 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025166 [exp] 520 / 0 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10016046 [exp] 451 / 2e-157 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10004287 [exp] 431 / 9e-150 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 352 / 4e-119 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 349 / 4e-118 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 338 / 8e-114 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10030715 [exp] 323 / 5e-108 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 318 / 1e-99 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019229 [exp] 194 / 2e-54 AT5G23490 667 / 0.0 unknown protein Lus10035610 [exp] 181 / 2e-52 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.002G003500.1 pacid=42776876 polypeptide=Potri.002G003500.1.p locus=Potri.002G003500 ID=Potri.002G003500.1.v4.1 annot-version=v4.1 ATGGGGCTTTTGGATCTCTTGATTGCTTCATCGATTCCTGTCTTGAAAGTGCTTTTGATAACAGCAATTGGATCATATCTTGCTCTTGATCATGTTGATG TGTTGGGAGAAGATGCTAGAAAGCATGTAAATAATGTTGTATTTTATGTTTTCAATCCAGCCCTTGTGTCCTCCAACCTTGCTGAAACTATTACATATGA CAGCATGAAGAAGATGTGGTTCATGCCATTCAATATTCTCATCACATTTGTCATTGGTTCCTTGCTTGGCTGGTTTGTTGTCCAATTCACCAGACCACCC TCACACCTGCATGGCCTCATCGTGGGTTGCTGTGCCGCAGGGAATTTGGGGAATATGTTTCTTATCATGATCCCAGCAATTTGTAAAGAAAAAGGAAGCC CCTTTGGATCTCCTGATATCTGCGAGACTTTTGGATTGGGTTATGTTTCACTTTCAATGGCGATTGGAGCTGTTTATCTATGGTCCTATGTGTTTAATAT TGTGCGGGCATCTTCATTTCCGAGCGTTAAGCAATTCGATAAGATCCATGTTGATGAATCTTCAATAGAAACACCCAAATCTGAGCTGGGGAGTTGCAAG GAACCACTACTAGCTTCTGAGAACCAGGCGGATCAATATGCACTGCGCAGCTCAGCGTCTGATGAGATGGTGGTTCGCAGCGGATTGAAGCAAAAGATCG TGGTGGTCTTCGGAAATATCAATTGGAAGTCGCTGTTTGCTCCTTCTACAATTGCAGCGATTGTTGGATTTGTAATTGGAGTCATCCCACTGACCCGGAA ATTAATGGTTGGCAATGATGCTCCTCTTCGCGTGATTCAAGACTCTGCTTCCTTGTTGGGAGATGGAGCCATCCCAACCCTCAACCTGATAATGGGGGCT AACCTTTTGAAAGGCTTACGAGGGTCAGGAATTCAGAAATCTGTCATTTTTGGCATCATAGTTGCCCGTTATATTGCCTTGCCCCTAATTGGCATTTTCA TCGTTAGAGGAGCACTCCGGTTCGGTTTTATTCCTCAAGATCCTCTGTATCAGTTTATTCTTCTGCTTCAATTTGCAGTTCCACCTGCAATGAACATGGG TACCATCACCCAACTGTTTGGAGCGGGAGAGACTGAATGTTCTGTTATCATACTCTGGGCTTATGCCTTGGCTTCAATTTCACTCACTCTTTGGTCAACC TTCTTTATGTGGCTGGTGGCTTGA
AA sequence Show only first row Show all	>Potri.002G003500.1 pacid=42776876 polypeptide=Potri.002G003500.1.p locus=Potri.002G003500 ID=Potri.002G003500.1.v4.1 annot-version=v4.1 MGLLDLLIASSIPVLKVLLITAIGSYLALDHVDVLGEDARKHVNNVVFYVFNPALVSSNLAETITYDSMKKMWFMPFNILITFVIGSLLGWFVVQFTRPP SHLHGLIVGCCAAGNLGNMFLIMIPAICKEKGSPFGSPDICETFGLGYVSLSMAIGAVYLWSYVFNIVRASSFPSVKQFDKIHVDESSIETPKSELGSCK EPLLASENQADQYALRSSASDEMVVRSGLKQKIVVVFGNINWKSLFAPSTIAAIVGFVIGVIPLTRKLMVGNDAPLRVIQDSASLLGDGAIPTLNLIMGA NLLKGLRGSGIQKSVIFGIIVARYIALPLIGIFIVRGALRFGFIPQDPLYQFILLLQFAVPPAMNMGTITQLFGAGETECSVIILWAYALASISLTLWST FFMWLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20925			Auxin efflux carrier family pr...		Potri.002G003500 [exp]	0	1
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.001G067700 [exp]	2.82	0.7102
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.011G007400 [exp]	13.07	0.6515
AT4G14650			unknown protein		Potri.010G081000 [exp]	14.69	0.6694
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	18.70	0.6601
					Potri.005G098650 [exp]	20.73	0.6493
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	29.56	0.5990
AT5G44250			Protein of unknown function DU...		Potri.002G127600 [exp]	35.09	0.6008
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G031000 [exp]	38.70	0.6363
AT1G27150			Tetratricopeptide repeat (TPR)...		Potri.010G035400 [exp]	44.88	0.6386
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.014G040700 [exp]	48.34	0.6328

Compare expression of checked genes

Potri.002G003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.