Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20920 1200 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G09620 1093 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 422 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 414 / 1e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 402 / 4e-128 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 333 / 1e-100 DEAD box RNA helicase family protein (.1.2) AT3G01540 327 / 1e-98 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 334 / 6e-97 DEAD box RNA helicase family protein (.1) AT2G33730 317 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G51280 295 / 3e-87 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257400 [exp] 1472 / 0 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 412 / 1e-130 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 414 / 1e-128 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 403 / 1e-128 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 407 / 3e-128 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 345 / 2e-103 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 338 / 6e-101 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 345 / 1e-100 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.019G130900 [exp] 320 / 1e-96 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035327 [exp] 932 / 0 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025525 [exp] 405 / 2e-130 AT1G20920 451 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037527 [exp] 416 / 7e-130 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 404 / 3e-127 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 402 / 2e-126 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 395 / 2e-125 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 394 / 4e-125 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10011466 [exp] 416 / 3e-123 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032133 [exp] 339 / 1e-102 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 337 / 5e-102 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G003600.13 pacid=42777486 polypeptide=Potri.002G003600.13.p locus=Potri.002G003600 ID=Potri.002G003600.13.v4.1 annot-version=v4.1 ATGGAGGACGTGAAACATAAATCTAGAAAAGATGATTCGGAACGGAAGGAGGACAAAGAGGATTCAAAGAGGAGTCATAGAGACAGGGACAGGGATAGGG ACAGGGACAGGGACAGGAATGGAGAGAGGCATCGAGACAGAGAGAAGAGAGAACGTGAAAGCATCAGGCGTTCTGAGAGAGACAAGAGTAGTGATTCTGA TGAAAAGGAAAGGGAGAAAGAGAAGCATAAAGACAGGGATAGAGACAGGGATAAGGATAGAGCAGCAAGGAGTAGGGATGGTGATAAAGAGAGAGCTAAG GACAGGAACAGAGATAGAGACAAGGACAGAGAGGAGAAGAAGGATAGGGACAAGGACAGAGAGGAGAAGAGGGATAGGGACAAGGACAGAGAGGAGAAGA GGGAGAGGGCAAAGGAGAAAGAGAAAGATAGGGAAAGGGAAAGGGAAAGGGAAAGGGAGAAGAGGGAACGTGAAAGGGAGAGAGATAGAGAAAGGGAGAG GAAGGAGCGTGACAGAGAAGAAAGGGAGAGGGAGAAGAGGGAGAGAGAAGAAAGGGAGAGGGAGAAGAGGGAGAGAGAAAGGGAGAGGAGGACTAGGGAA AGGGAAAAGTGTAGGGAATTGAGCAGTGACAGTGATGATGATTCCAAGGATCGTGATAAGAAGCGGCGAAGAAGAGATGATGATGACTACAAGGAGAGAG TGCGCGAACAGAGCATTAGCAGGTCAAACAGGCACAGGGATAACAGTGAAGAGATCCCGAGGAAAAAGAGTGACGAGGAGGACTCTGATAAGAATGTGAT TAAAACCCGAGAAGAGGAGTTAGAACAGGAGCAGAAGAAATTGGACGAGGAGATGGAGAAGAGGAGGAGGAGAGTCCAGGAATGGCAAGAGCTAAGGAGG AAGAAGGAAGAAACTGAGAGGGAAAAGCATGGGGAAGAAGCTGATGTTAATGAACCCAAGACTGGTAAAACCTGGACTCTTGAAGGAGAATCCGACGATG AAGAAGCACCTCCCACCGGAAAATCTGAGACGGATATGGACCTGGAGGAAAATGCAAAACCTGATGAAGAAGTTGAAGATGCAATGGTAGTGGACACTGA GAATGACATCTCTGCTCCACAAAATGAGGATGATGCCGTTAATGGGGATGAGGAAATTGATCCACTTGATGCTTTTATGAATTCTATGGTGTTACCTGAG GTTGAGAAGCTAAACAGTACTCTGGTTACTCATACTGCTGATGACAATAAAACAGACTTGAAGAATAAGGATAAGAAGGAAGAGCGAATCAATGGAGAAC AGAGGAAGAAAGGCTCTCACAAATCTCTAGGGAGAATTGTTCCAGGGGAAGATTCTGATTCAGACTATGGGGATCTTGAAAATGGTGAAGATCCTCTAGA AGAGGAGGATGATGACGAGTTCATGAAGAGGGTGAAGAAAACAAAAGCTGAGAAACTGTCCATTGTTGACCACTCAAAGATTGATTACAATCCTTTCCGG AAGAATTTCTATATTGAAGTGAAGGAGATCTCGAGGATGACTCCTGAGGAGGTTGTTGCGTGTAGGAAAGAACTGGAGTTAAAATTACATGGAAAGGATG TGCCAAAACCAATTAAAACCTGGCACCAGACAGGACTCACAAGTAAAATTCTAGAGACGATAAAGAAACTTAATTATGAGAAGCCAATGACAATTCAAGC TCAGGCCCTGCCTATAATCATGAGTGGCCGGGACTGCATAGGCATTGCAAAAACTGGTTCAGGCAAAACCCTTGCGTTTGTGCTGCCAATGCTGAGGCAT ATCAAGGACCAGCCTCCTGTGGAAGCTGGAGAAGGACCGATTGGGCTTGTAATGGCACCCACAAGGGAGCTTGTGCAGCAGATCCACAGCGATATAAAGA AGTTTGCTAAGGCCCTGAGTATCAGATGTGTGCCTGTTTATGGAGGTTCTGGTGTTGCCCAACAAATTAGTGAATTAAAGCGGGGGACAGAGATAGTTGT CTGTACTCCAGGCAGAATGATTGACATACTGTGCACCAGTGGAGGAAAAATCACTAATCTTCGCAGAGTTACATATCTGGTTATGGATGAAGCTGATCGG ATGTTTGACATGGGGTTTGAACCTCAAATCACTAGAATTGTCCAGAATATTCGCCCAGATCGTCAAACTGTACTCTTTTCTGCCACTTTCCCTCGACAGG TTGAAACTTTGGCTCGTAAAGTACTGAACAAACCTGTGGAAATACAGGTCGGTGGGAGGAGTGTGGTGAATAAGGACATCACTCAGCTGGTTGAATTAAG AACAGAAGATCAAAGGTGGCTTAGGCTTTTAGAACTACTTGGTGAATGGTACCAGAAGGGAAAAATTTTGATATTTGTCCAATCACAGGACAAATGTGAT TCATTGTTTAGGAACTTACTGAAGTTTGGTTACCCTTGCCTCTCACTTCATGGGGCTAAGGATCAGACAGATCGTGAATCCACCATTTCGGATTTTAAGA CCAATGTCTGCAATTTGATGATTGCAACAAGTGTTGCAGCCAGAGGTTTAGACGTGAAGGATCTAGAATTGGTAATCAATTATGATGCTCCAAACCACTA TGAGGATTATGTTCACCGTGTTGGTCGGACTGGCCGAGCTGGTCGCAAAGGCTGTGCCATCACATTTATCTCCGAGGATGATGCAAGATATGCACCAGAT CTTGTAAAAGCGTTGGAACTCTCTGAGCAAGTTGTTCCACAAGATTTGAAAGCTCTAGCTGATGGTTTTATGGCAAAAGTGAATCAGGGTCTTGAGCAAG CCCATGGAACAGGTTATGGTGGAAGTGGTTTTAAATTCAATGAAGAGGAGGATGAAAAGAGAATGGCGGCAAAGAAAGCACAGGCAAAAGAATATGGCTA TGAGGATGAGAAGTCTGATTCAGAAGATGAAGATGAAGTTGTTCGGAAGTCAGTCGGTGACGTCTCACAGCAGACTGCCCTTGCTCAGCAGATAGCTGCT CTTGCTGCTGTCTCAAAAGTCCCCATGCCTGCACCACCAATTTCTCACTCTGTTGCTCAATTGCTTTCTAATGGTGGATTACCTGTTCCTCCCAATCCAG GTCCAGCTGTTGTTTCTGTTACTGGGCTGCCTTTTGTTCCAAATAATGAAGGGGCAGCCAGGGCAGCAGCACTTGCAGCTGCCATGAATTTGCAACACAA CCTGGCAAGGATCCAAGCTGATGCAATGCCTGAACATTATGAAGCAGAGCTGGAAATCAATGATTTTCCCCAAAATGCTCGGTGGAAGGTTACCCACAAG GAAACATTGGGCCCAATTTCAGATTGGACTGGGGCTGCCATTACTACCAGGGGGCAGTTTTTTCCACCAGGCAAGGTGCCGGGACCAGGAGAGCGCAAGC TCTACTTGTTCATTGAGGGTCCTACTGAACAGTCTGTCAAGAGAGCTAAAGCTGACCTAAAACGTGTTTTGGAAGACATCACGAACCAGACATACCAACT TCCTGGTGGAACTCAACCAGGAAAATACTCGGTTGTATGA
AA sequence Show only first row Show all	>Potri.002G003600.13 pacid=42777486 polypeptide=Potri.002G003600.13.p locus=Potri.002G003600 ID=Potri.002G003600.13.v4.1 annot-version=v4.1 MEDVKHKSRKDDSERKEDKEDSKRSHRDRDRDRDRDRDRNGERHRDREKRERESIRRSERDKSSDSDEKEREKEKHKDRDRDRDKDRAARSRDGDKERAK DRNRDRDKDREEKKDRDKDREEKRDRDKDREEKRERAKEKEKDREREREREREKRERERERDRERERKERDREEREREKREREEREREKRERERERRTRE REKCRELSSDSDDDSKDRDKKRRRRDDDDYKERVREQSISRSNRHRDNSEEIPRKKSDEEDSDKNVIKTREEELEQEQKKLDEEMEKRRRRVQEWQELRR KKEETEREKHGEEADVNEPKTGKTWTLEGESDDEEAPPTGKSETDMDLEENAKPDEEVEDAMVVDTENDISAPQNEDDAVNGDEEIDPLDAFMNSMVLPE VEKLNSTLVTHTADDNKTDLKNKDKKEERINGEQRKKGSHKSLGRIVPGEDSDSDYGDLENGEDPLEEEDDDEFMKRVKKTKAEKLSIVDHSKIDYNPFR KNFYIEVKEISRMTPEEVVACRKELELKLHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRH IKDQPPVEAGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLLELLGEWYQKGKILIFVQSQDKCD SLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAARGLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPD LVKALELSEQVVPQDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAKEYGYEDEKSDSEDEDEVVRKSVGDVSQQTALAQQIAA LAAVSKVPMPAPPISHSVAQLLSNGGLPVPPNPGPAVVSVTGLPFVPNNEGAARAAALAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARWKVTHK ETLGPISDWTGAAITTRGQFFPPGKVPGPGERKLYLFIEGPTEQSVKRAKADLKRVLEDITNQTYQLPGGTQPGKYSVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20920			P-loop containing nucleoside t...		Potri.002G003600 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	1.00	0.9755
AT3G25840			Protein kinase superfamily pro...		Potri.010G126900 [exp]	1.41	0.9664
AT4G31880			unknown protein		Potri.018G109600 [exp]	2.44	0.9384
AT4G35540			zinc ion binding;transcription...		Potri.004G084700 [exp]	4.89	0.9437
AT5G27230			Frigida-like protein (.1)		Potri.005G044100 [exp]	5.29	0.9276
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	5.29	0.9189
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	6.70	0.9387
					Potri.017G058200 [exp]	6.92	0.9207
AT3G25840			Protein kinase superfamily pro...		Potri.008G119100 [exp]	10.58	0.9240
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	11.40	0.9219

Compare expression of checked genes

Potri.002G003600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.