Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76510 451 / 5e-157 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 413 / 1e-142 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT2G17410 365 / 5e-119 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76110 55 / 5e-08 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 44 / 0.0002 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257300 [exp] 482 / 7e-171 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.004G208900 [exp] 390 / 1e-131 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 362 / 7e-121 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 359 / 9e-120 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G315200 [exp] 53 / 2e-07 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 53 / 3e-07 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 43 / 0.0003 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.013G054900 [exp] 42 / 0.0005 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016045 [exp] 418 / 6e-144 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10022981 [exp] 368 / 2e-122 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10001618 [exp] 365 / 1e-121 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10013852 [exp] 258 / 1e-80 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10025165 [exp] 57 / 1e-08 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10007127 [exp] 55 / 1e-07 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 54 / 1e-07 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 50 / 2e-06 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10014762 [exp] 48 / 1e-05 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 44 / 0.0002 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G003700.1 pacid=42777539 polypeptide=Potri.002G003700.1.p locus=Potri.002G003700 ID=Potri.002G003700.1.v4.1 annot-version=v4.1 ATGAGCGAAATGGAAGATAGTGAAATGGTTACGGTACAAGATTTGCTGGTAGACTCGGAAGATAAGAAGCCGAGTGAGGCCTCTGTTAAAGAGCAGGAAG AAACTGCTGATGCTTCAGTGGAACAAAAGTCGAATGAGAATGGGCAGACATCGGTTGCTGACGATGACCACACTGTGACTTTGGCATCTGATGTTCCTAT GAGTGATACTCAAGCTTTGCCTAATGAGAAAAATGATACGGATGAAAATATTAATCAGCAAGCGGGGGAAGAGAAAACTGATGGAGATGATGGTGGCTGT GTTCAAAATCAGCCACAAACTGCTACTCCATCGACCCCGAGGAGGCATGCGACTCCTAAAGCAAAGCAAGATAGTGCGGCAAAGTCCAAGAACGTGTGGA CGGATATTAAGATGGGGGAGGCTGATGTTGCAGGTACCCCAGAAGAGCGAGCTGCATTCATGAAGGAGCTGGAAACTTTTTATAAGCAGAATACCATGGA TTTCAAGCCCCCCAAGTTTTACGGGGAGCCATTGAACTGCCTGAAGTTATGGAGGTCTGTGATCAAACTGGGTGGCTATGAAGTGGTTACTGCGAACAAG TTGTGGCGGCAAGTGGGAGAGTCTTTCCACCCTCCCAAGACCTGCACAACGGTGTCTTGGACATTCCGTATTTTCTATGAGAAGGCACTTCTGGAATATG AAAAGCATAAGAAGGAAACTGGTGAGCTTCAACTTCCTAGTTCACCCTTGCATCAGGCTACTAGTGTTGAAAAGGAGGCAAGTGGGTACCAAGCGCCTGG ATCTGGCAGGGCAAGAAGGGATGCTGCTGCTCGTGCTATGCAGGGTTGGCATGCCCAGCGTCACCTTGGACATGGTGAGGTTAGCGAGCCAATTGCTAAG GTCAAGAGCTTAAATTTTGCAAGGCGTGAAAAGCCTCTCAAAAGTATCGGTTTGCACAGACAGAAGACAACTAACTTGGAACTTGCCGAGAGACCTATGA ATGCTGAACCAGATAAGGAAGTGGATGCTGAAATTGCTGATATTGGCCCCCCTGCTGATTGGGTGAAGATCAATGTGCGGGAAAGTAAAGATTGCTATGA GATATATGCTCTAGTCCCAGGACTTCTCCGTGAAGAAGTTCGGGTTCAATCAGATCCTGTTGGACGTCTGGTTATAACAGGTCAACCAGAGCAGCTGGAC AATCCTTGGGGTATAACACCATTTAAGAAGGTTGTGAGCTTACCTACGAGAATTGATCCACTTCAGACATCTGCTGTTGTTAGCTTGCATGGGCGACTCC ATGTTCGTGTCCCTTTTGAGCACGGATCAGCTTGA
AA sequence Show only first row Show all	>Potri.002G003700.1 pacid=42777539 polypeptide=Potri.002G003700.1.p locus=Potri.002G003700 ID=Potri.002G003700.1.v4.1 annot-version=v4.1 MSEMEDSEMVTVQDLLVDSEDKKPSEASVKEQEETADASVEQKSNENGQTSVADDDHTVTLASDVPMSDTQALPNEKNDTDENINQQAGEEKTDGDDGGC VQNQPQTATPSTPRRHATPKAKQDSAAKSKNVWTDIKMGEADVAGTPEERAAFMKELETFYKQNTMDFKPPKFYGEPLNCLKLWRSVIKLGGYEVVTANK LWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKKETGELQLPSSPLHQATSVEKEASGYQAPGSGRARRDAAARAMQGWHAQRHLGHGEVSEPIAK VKSLNFARREKPLKSIGLHRQKTTNLELAERPMNAEPDKEVDAEIADIGPPADWVKINVRESKDCYEIYALVPGLLREEVRVQSDPVGRLVITGQPEQLD NPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLHVRVPFEHGSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G003700 [exp]	0	1
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	3.46	0.7907
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G299000 [exp]	6.32	0.7436
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.015G046700 [exp]	7.21	0.7828
AT2G14050		MCM9	minichromosome maintenance 9 (...		Potri.019G014403 [exp]	16.97	0.6911
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	22.75	0.7437
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	25.80	0.7417
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	30.52	0.7544
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	36.98	0.7265
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Potri.016G144200 [exp]	38.98	0.7108
AT5G49960			unknown protein		Potri.013G128100 [exp]	44.45	0.7114

Compare expression of checked genes

Potri.002G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.