Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HMG1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76490 908 / 0 HMGR1, HMG1, AtHMGR1 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) AT2G17370 751 / 0 HMGR2, HMG2 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, 3-hydroxy-3-methylglutaryl-CoA reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257000 [exp] 1027 / 0 AT1G76490 817 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.001G457000 [exp] 886 / 0 AT1G76490 833 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.011G145000 [exp] 882 / 0 AT1G76490 845 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.004G208500 [exp] 829 / 0 AT1G76490 808 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.009G169900 [exp] 819 / 0 AT1G76490 815 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026567 [exp] 723 / 0 AT1G76490 737 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Lus10013850 [exp] 721 / 0 AT1G76490 740 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00368 [poplar] [flax] HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase
Representative CDS sequence Show only first row Show all	>Potri.002G004000.2 pacid=42779601 polypeptide=Potri.002G004000.2.p locus=Potri.002G004000 ID=Potri.002G004000.2.v4.1 annot-version=v4.1 ATGGACTCCCGCCGCCTGCCACCTAAATCATCACGCACCACGTCCTCTAACGACGGCGGTCCTCTCCACCATCACCAGAAGCGACCTGCTCCTTCCGTCG ACAACCGCTCTCCATCACCGACACCGAAAGCATCAGACGCGCTTCCCCTCCCTCTCTACCTGACAAACGCCATTTTCTTCACGCTTTTCTTCTCCGTAGC CTACTACCTCCTCCACCGGTGGCGTGAAAAGATCCGTGACTCTACGCCACTCCATGTCGTTACTTTCCCCGAAATCGCCGCCATTGTTTCCCTAATGGCT TCCTTTATTTACCTTTTAGGATTTTTTGGAATCGATTTTGTTCAATCATTCATCACGCGCCCTTCTCACGACACGTGGGATTTGGAAGATACCGACAATC CTAACTACCTCATCAACGAAGATCACCGTCTGGTTACTTGCCCTCCGCCCGCAAACGTCCCTCCCATTTCCAAATTACCCAATCCTGAACCAATAATTAC ACCTTTAGCCTCCGTGGAAGATGAAGAAATCGTTAAATCCGTCACAGAAGGAACATTGCCTTCTTATTCGCTTGAATCAAAGCTTGGTGATTGTAAACGA GCAGCTGTGATTCGACGGGAGGCGTTGCAGAGGACAACTGGGAGATCTCTAGAGGGTCTACCTATTGAAGGATTTGATTATGATTCAATTTTAGGACAGT GCTGCGAAATGCCGGTGGGCTACGTCCAGATTCCGGTGGGGATTGCTGGCCCTTTGTTGCTGAATGGGATGGAGTATATGGTCCCAATGGCAACGACAGA GGGTTGTTTGGTTGCAAGTACGAACAGAGGGTGTAAGGCAATGTACGCTTCCGGTGGGGCTACTAGTGTTTTGTTGGCAGATGGGATGACTAGGGCTCCT GTTGTTAGATTCGAGACGGCGAAACGAGCCTCGGAATTGAAGTTGTTCTTGGAGGATCCTGATAACTTTGATACTTTGTCCATTGTTTTTAACAGGTCGA GTAGGTTTGCGAGGCTTCAAGGAATTAAATGCTCTATGGCTGGGAAGAATCTTTATATGCGATTTAAATGTAGTACCGGGGATGCAATGGGGATGAACAT GGTCTCTAAAGGGGTTCAGAATGTGCTTGATTTCCTTCAGAATGATTTCCATGACATGGAAGTTATTGGCATTTCTGGTAATTTTTGTTCGGACAAGAAA CCTGCGGCTGTAAACTGGATTGAAGGACGTGGGAAATCGGTTGTTTGTGAGGCAATTATCAGGGAAGAGATAGTCAAGAAGGTGTTGAAAACAAGTGTTG CTTCCCTTGTGGAGCTCAACATGCTCAAGAATCTTGCTGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATTTAATGCCCATGCCAGCAATATTGTCTCTGC AATCTTCATAGCCACTGGCCAGGATCCAGCACAGAATATTGAGAGTTCTCACTGCATTACCATGATGGAGGCTGTTAACAACGGAAAGGATCTTCACATC TCTGTGACTATGCCTAGCATTGAGGTGGGTACAGTTGGAGGTGGAACTCAACTTGTATCGCAATCCGCCTGCCTGAATCTACTTGGTGTCAAGGGTGCAA GCAAAGAGTCACCTGGCTCAAACTCAAGACTCTTGGCTACCATAGTAGCTGGTTCAGTTTTAGCCGGGGAGCTCTCTCTAATGGCTGCCATTGCACAAGG GCAGCTTGTCAAGAGTCACATGAAATACAACAGATCGAGCAAAGACATATCCAAAGCTGCATCTTAG
AA sequence Show only first row Show all	>Potri.002G004000.2 pacid=42779601 polypeptide=Potri.002G004000.2.p locus=Potri.002G004000 ID=Potri.002G004000.2.v4.1 annot-version=v4.1 MDSRRLPPKSSRTTSSNDGGPLHHHQKRPAPSVDNRSPSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRDSTPLHVVTFPEIAAIVSLMA SFIYLLGFFGIDFVQSFITRPSHDTWDLEDTDNPNYLINEDHRLVTCPPPANVPPISKLPNPEPIITPLASVEDEEIVKSVTEGTLPSYSLESKLGDCKR AAVIRREALQRTTGRSLEGLPIEGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLNGMEYMVPMATTEGCLVASTNRGCKAMYASGGATSVLLADGMTRAP VVRFETAKRASELKLFLEDPDNFDTLSIVFNRSSRFARLQGIKCSMAGKNLYMRFKCSTGDAMGMNMVSKGVQNVLDFLQNDFHDMEVIGISGNFCSDKK PAAVNWIEGRGKSVVCEAIIREEIVKKVLKTSVASLVELNMLKNLAGSAVAGALGGFNAHASNIVSAIFIATGQDPAQNIESSHCITMMEAVNNGKDLHI SVTMPSIEVGTVGGGTQLVSQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMAAIAQGQLVKSHMKYNRSSKDISKAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.002G004000 [exp]	0	1	Pt-HMG1.3
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	4.47	0.6594
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.006G156176 [exp]	13.34	0.6705
AT5G18850			unknown protein		Potri.010G026900 [exp]	14.96	0.6281
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	32.49	0.6136	Pt-RALFL23.3
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.008G112000 [exp]	38.15	0.5247
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	39.37	0.5854
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	41.89	0.5771
AT2G45730			eukaryotic initiation factor 3...		Potri.005G238200 [exp]	42.35	0.5860
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	49.35	0.5994
AT1G51630			O-fucosyltransferase family pr...		Potri.008G008300 [exp]	54.84	0.5915

Compare expression of checked genes

Potri.002G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.