Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57710 270 / 7e-89 Protein kinase superfamily protein (.1) AT3G57750 258 / 4e-84 Protein kinase superfamily protein (.1.2) AT3G57720 257 / 1e-83 Protein kinase superfamily protein (.1) AT3G57700 250 / 4e-81 Protein kinase superfamily protein (.1) AT3G57730 250 / 8e-81 Protein kinase superfamily protein (.1) AT3G52530 214 / 9e-67 Protein kinase superfamily protein (.1) AT3G57740 210 / 3e-65 Protein kinase superfamily protein (.1) AT3G57770 187 / 1e-57 Protein kinase superfamily protein (.1) AT1G67470 190 / 4e-57 Protein kinase superfamily protein (.1) AT1G65250 177 / 1e-52 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003300 [exp] 449 / 1e-159 AT3G57710 263 / 2e-86 Protein kinase superfamily protein (.1) Potri.013G020100 [exp] 236 / 2e-75 AT3G57710 203 / 2e-62 Protein kinase superfamily protein (.1) Potri.005G068000 [exp] 218 / 2e-65 AT3G57710 214 / 3e-63 Protein kinase superfamily protein (.1) Potri.018G148498 [exp] 172 / 1e-48 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185732 [exp] 167 / 2e-47 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G185750 [exp] 169 / 5e-47 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185850 [exp] 166 / 7e-46 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.003G185800 [exp] 164 / 3e-45 AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 163 / 5e-45 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008105 [exp] 167 / 2e-46 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10034085 [exp] 164 / 3e-45 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10004504 [exp] 162 / 1e-44 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10003063 [exp] 150 / 2e-40 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 149 / 1e-39 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013385 [exp] 145 / 1e-38 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013143 [exp] 138 / 2e-38 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10020747 [exp] 139 / 6e-37 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 138 / 1e-36 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 137 / 1e-36 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G004900.1 pacid=42777162 polypeptide=Potri.002G004900.1.p locus=Potri.002G004900 ID=Potri.002G004900.1.v4.1 annot-version=v4.1 ATGGAGAGAAAAAGGCAGAGGATATGTTTGGATAAGAAAATGCATAAGAGGGAAAGGCAGAGGATGTTCTTGGATCGTGGAGGTGAGCTATTGGAAGAGC TGATTGCTTTTTGTAATGCTAGATCCAACCCTATCAGGAACTTCTCTCTCAACCAACTCCAAAAAGCCATTGATGACTACCATCCAAGCCATCCTCTTGA AACTCTCACAGATTTAGAAGATTCAGGTTTTGAATGGTACGAAGGAATTCTTGAACAGCGCCTTGTTTTCATCAAGAGCTTTACGCGTTGCACTAAAGAG GTCTACCGTGACATCGTGGTCTCGTCGCAGATGAGCAGCCACAACAATGTTCTCAAGCTTTCAGGTTGCTGTTTGGAGATCCCAGCAGGTCCAGCTCTAG TTTTTGAATATCCAGAGAATGGATGTCTGGAAAGACTTATTCATGATGGATCATTAACTTGGGGAACCAGATTGAAAATTGCCAAGGAAATTGCAAATGC AGTGACATATCTCCACACTGCATTTCCCAGGCCAACCATCCACAGAGACATAAAGCCTCGAAATATCTTCCTCGGCCAGAATTATGATGCCAAACTCTCT AATTTCTCTCTCTCCATATCAATCCCAGAAGGGGAATCACAAGTCGAAGATCAGCTCGCAGGGACAATTTTTTTCGTGGACCCTGTTTATGTTCAAACTG GTTTTGTTACAGAGAAGACTGATGTCTACAGCTTTGGGGTGCTTCTGCTCGTTCTTCTTACTGGACGAATAACACTTCAAGAGCGAATCTTTCTGATAGA TTATGTGAAAGACTTGGTTGAACAGGATCAGGTAAATGAAGTTGTGGATCCTAGGATTAGGGGAAACAGGGGAGAAGCAATTGATCAGCAACTGGTGGAA GCATCCATTGAACTAGCCTTGAGATGCACCAATGGTTCAGGAGAAGATAGGCCACTAATGATAGAAGTAGCAAAAGAACTCCAGCGAATTGAAAGATCAA TCACTGCCGCTCCGTAG
AA sequence Show only first row Show all	>Potri.002G004900.1 pacid=42777162 polypeptide=Potri.002G004900.1.p locus=Potri.002G004900 ID=Potri.002G004900.1.v4.1 annot-version=v4.1 MERKRQRICLDKKMHKRERQRMFLDRGGELLEELIAFCNARSNPIRNFSLNQLQKAIDDYHPSHPLETLTDLEDSGFEWYEGILEQRLVFIKSFTRCTKE VYRDIVVSSQMSSHNNVLKLSGCCLEIPAGPALVFEYPENGCLERLIHDGSLTWGTRLKIAKEIANAVTYLHTAFPRPTIHRDIKPRNIFLGQNYDAKLS NFSLSISIPEGESQVEDQLAGTIFFVDPVYVQTGFVTEKTDVYSFGVLLLVLLTGRITLQERIFLIDYVKDLVEQDQVNEVVDPRIRGNRGEAIDQQLVE ASIELALRCTNGSGEDRPLMIEVAKELQRIERSITAAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57710			Protein kinase superfamily pro...		Potri.002G004900 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.001G437700 [exp]	1.41	0.8739
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.001G158000 [exp]	6.00	0.7252
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.001G110400 [exp]	6.63	0.7629
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.017G107300 [exp]	9.79	0.8078
AT5G46295			unknown protein		Potri.011G079900 [exp]	14.66	0.7779
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	14.69	0.7887	HMT3.1
					Potri.004G113000 [exp]	16.15	0.7292
AT1G22540			Major facilitator superfamily ...		Potri.013G106700 [exp]	21.90	0.7278
					Potri.008G139250 [exp]	23.23	0.7636
AT4G32480			Protein of unknown function (D...		Potri.013G129900 [exp]	23.91	0.7780

Compare expression of checked genes

Potri.002G004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.