Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33630 738 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G47290 180 / 5e-52 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G26260 181 / 8e-51 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT2G43420 102 / 4e-23 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT4G33360 52 / 5e-07 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 47 / 3e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G30620 43 / 0.0004 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G44480 42 / 0.0009 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005201 [exp] 339 / 1e-115 AT2G33630 277 / 1e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G218400 [exp] 177 / 3e-49 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.007G131200 [exp] 104 / 6e-24 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G127500 [exp] 48 / 1e-05 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G057600 [exp] 45 / 0.0001 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G020000 [exp] 43 / 0.0004 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 42 / 0.0006 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 42 / 0.0007 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127400 [exp] 42 / 0.0009 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030720 [exp] 751 / 0 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013202 [exp] 744 / 0 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010311 [exp] 168 / 3e-46 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 162 / 9e-44 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 100 / 5e-24 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10004028 [exp] 50 / 2e-06 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038423 [exp] 46 / 5e-05 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14934 [poplar] [flax] DUF4499 Domain of unknown function (DUF4499) CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.002G005100.1 pacid=42777563 polypeptide=Potri.002G005100.1.p locus=Potri.002G005100 ID=Potri.002G005100.1.v4.1 annot-version=v4.1 ATGCACTTGAGCGAGAATGAAGGGATAGAGGCCAACACCTTTGTAGTCACAGGTGGATTGGGTTTCGTGGGTTCCGCCTTATGTCTGGAGCTGGTCCGTC GAGGTGCTCGCCAAGTCCGAGCCTTTGATCTCCGACTCACTTCTCCTTGGTCTGATGATCTCAAGAATCATGGGGTTCGACTCATTCAAGGGGATCTTAC TCGAAAAAAAGATGTTGATAAAGCCTTACGTGGGGCCGATTGTGTTTTCCACCTTGCTTCGTATGGCATGTCGGGGAAAGAAATGCTCCAGTTTGGTCGG GTTGATGAGGTGAATATTAGTGGAACTTGTCTTGTTTTGGAGGCTTGTCTCGAGTTTGAGATCAGAAGGCTTGTTTATGTGAGCACATATAATGTTGTAT TCGGTGGAAAGGAGATTGTGAATGGCAATGAAAGCTTACCTTACTTCCCTATTGATGACCATGTTGATTCGTATGGGCGGAGCAAATCGATTGCTGAACA GTTGATTTTAAAGCACAATGGCCGACCTTTTAAGAAGAACAATGGAAAACGTCTTTACACGTGTGCAATTCGTCCCGCTGCTATATATGGGCCAGGTGAA GAAAGGCATTTTCCGAGGATTGTATCCTTTGCCAAGCTAGGTCTTCTGCCTTTCAAAATTGGTGATTCAAATGTGAAGACAGACTGGGTATATGTGGATA ACCTTGTGCTTGCAATAATATTGGCAAGCATGGGGCTTTTGGATGACATTCCCAAAAAAGGAGGGCATCCAGTTGCTGCTGGCCAGCCATACTTTATATC TGATGGGTCTCCAATCAACAGTTTTGAATTCCTGCGGCCTCTGCTTAGAAGCCTGGATTATGACCTACCAAAGGCTGCTTTATCTGTCTCTCATGCTCTT TTTCTGGGAAGGATGTTCTCTGCTATCTATACAGTCTTGTACCCATGGTTGAATCGGTGGTGGCTTCCTCAACCACTCATCCTTCCTGCTGAAGTATACA AGGTTGGCGTGACCCACTACTTCTCATTCCTAAAAGCCAAGGAGGAGCTTGGCTATGTTCCAATGGTTAGTCCTCGGGAGGGCATGGCTGCAACTATCTC ATACTGGCAGGAAAGGAAAAGGAAAGCTTTGGATGGTCCTAACATATATGCATGGCTCTTTGTTGTGGTTGGAATGATTTCATTGTTCGGTGTTGCTTAC TTGCCAGACATAGGACCAGTGCCGCTTTTAAGAGCTATATCCCTTTTCTTCTTTCGGTCTATGTGGGTGATAAGGGCAGTTTTTGTTTTATCTATGGCAG CACATCTTGGCGAGGGTCTATATGCATGGCATCTGGCAAAAATGGTGGATCCTGCAAATGCAAGAGCATGGTTTTGGCAGACATTTGCGCTCGGGTTCTT TTCATTGCGTTTTCTGTTGAAGAGAGCCAAGAGTTAA
AA sequence Show only first row Show all	>Potri.002G005100.1 pacid=42777563 polypeptide=Potri.002G005100.1.p locus=Potri.002G005100 ID=Potri.002G005100.1.v4.1 annot-version=v4.1 MHLSENEGIEANTFVVTGGLGFVGSALCLELVRRGARQVRAFDLRLTSPWSDDLKNHGVRLIQGDLTRKKDVDKALRGADCVFHLASYGMSGKEMLQFGR VDEVNISGTCLVLEACLEFEIRRLVYVSTYNVVFGGKEIVNGNESLPYFPIDDHVDSYGRSKSIAEQLILKHNGRPFKKNNGKRLYTCAIRPAAIYGPGE ERHFPRIVSFAKLGLLPFKIGDSNVKTDWVYVDNLVLAIILASMGLLDDIPKKGGHPVAAGQPYFISDGSPINSFEFLRPLLRSLDYDLPKAALSVSHAL FLGRMFSAIYTVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSFLKAKEELGYVPMVSPREGMAATISYWQERKRKALDGPNIYAWLFVVVGMISLFGVAY LPDIGPVPLLRAISLFFFRSMWVIRAVFVLSMAAHLGEGLYAWHLAKMVDPANARAWFWQTFALGFFSLRFLLKRAKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	0	1
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	2.00	0.7135
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.007G018000 [exp]	3.74	0.7397	Pt-TRXH.1,PtrTrxh4
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	4.00	0.6792
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G019600 [exp]	5.74	0.7085
AT2G25910			3'-5' exonuclease domain-conta...		Potri.006G234000 [exp]	8.48	0.6776
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	10.19	0.6993
AT4G37220			Cold acclimation protein WCOR4...		Potri.007G032000 [exp]	18.16	0.6414
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Potri.004G183300 [exp]	18.76	0.6293
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	19.59	0.6711
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	20.49	0.6796

Compare expression of checked genes

Potri.002G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.