Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33630 276 / 2e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005100 [exp] 339 / 4e-116 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G218400 [exp] 45 / 2e-05 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030720 [exp] 297 / 1e-99 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013202 [exp] 292 / 1e-97 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010311 [exp] 47 / 6e-06 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 43 / 0.0001 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14934 [poplar] [flax] DUF4499 Domain of unknown function (DUF4499)
Representative CDS sequence Show only first row Show all	>Potri.002G005201.1 pacid=42778272 polypeptide=Potri.002G005201.1.p locus=Potri.002G005201 ID=Potri.002G005201.1.v4.1 annot-version=v4.1 ATGCTTGTCCTTTCAAGGTCTCCGATCAGCACTTTTGAATTCCTCCAGCCACTGCTTAGAAGTCTGGATTATGACCAACCAAAGGCCAGTTTGTCTGTCC CTCGTGCTCTTATGCTGGGAAGGATTTTCTGGGCAATCTATACTGTATTATACCCGTGGTTGAATCGCTGGTGGCTTCCTCAGCCACTGATCCTTCCTGC TGAAGTGTACAAGGTTGGTGTGACCCACTACTTCTCTTTCCTGAAAGCCAGGCAGGAGCTTGGCTATGTTCCAATGGTGAGTCCTCGAGAGGGCATGGCT GCAACTATCTCATACTGGCAGGAGCGGAAGACGAAGACTTTGGATGGACCTACCATATATGCAAGGTTGTTTGTTGTGATTGGAATAACTTCCGTGTTCA GTGCTGCTTACTTGCCAGACATAGTACCACCGGTGTCACTTCTCAAAGCCACAAGCCTTGTCCTCTTCCGATCAATGTGGGTTGTGAGAACAATATTTCA TTTAGCCATGGCCGCACATATTGGTGAGGCTGTTTATGCATGGAATCTTGCAAGAAGGGTGGATCCTGCTAATGCAAGAGCATGGTTTTGGCAAACATTA GTGTTCGGAATCCGTTCATTGCGTTTTCTGCTGAAGAGAGCCAAGAGTGAGGCCACATTGTAA
AA sequence Show only first row Show all	>Potri.002G005201.1 pacid=42778272 polypeptide=Potri.002G005201.1.p locus=Potri.002G005201 ID=Potri.002G005201.1.v4.1 annot-version=v4.1 MLVLSRSPISTFEFLQPLLRSLDYDQPKASLSVPRALMLGRIFWAIYTVLYPWLNRWWLPQPLILPAEVYKVGVTHYFSFLKARQELGYVPMVSPREGMA ATISYWQERKTKTLDGPTIYARLFVVIGITSVFSAAYLPDIVPPVSLLKATSLVLFRSMWVVRTIFHLAMAAHIGEAVYAWNLARRVDPANARAWFWQTL VFGIRSLRFLLKRAKSEATL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005201 [exp]	0	1
					Potri.003G087350 [exp]	1.41	0.8682
AT4G30770			Putative membrane lipoprotein ...		Potri.007G103000 [exp]	3.46	0.8637
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Potri.005G152100 [exp]	6.92	0.8581
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.014G025700 [exp]	7.21	0.8426	NAC146
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	7.41	0.8590
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	12.36	0.8508
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	13.67	0.8472	CNGC.1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	15.65	0.8572
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	16.00	0.8610
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	19.44	0.8416

Compare expression of checked genes

Potri.002G005201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.