Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrPHT1-9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76430 571 / 0 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 530 / 0 PHT1;8 phosphate transporter 1;8 (.1) AT5G43350 451 / 2e-154 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT2G38940 448 / 4e-153 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT5G43360 448 / 4e-153 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT2G32830 438 / 4e-149 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT3G54700 437 / 8e-149 PHT1;7 phosphate transporter 1;7 (.1) AT5G43370 429 / 1e-145 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43340 415 / 2e-140 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT4G08878 201 / 2e-60 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G256100 [exp] 806 / 0 AT1G76430 613 / 0.0 phosphate transporter 1;9 (.1) Potri.010G071500 [exp] 463 / 4e-159 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 447 / 1e-152 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 441 / 3e-150 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.002G038900 [exp] 434 / 1e-147 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071600 [exp] 432 / 8e-146 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 428 / 3e-145 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 426 / 2e-144 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 410 / 4e-138 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016042 [exp] 489 / 5e-169 AT1G76430 542 / 0.0 phosphate transporter 1;9 (.1) Lus10014754 [exp] 459 / 2e-157 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10011826 [exp] 456 / 4e-156 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 447 / 2e-152 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10003560 [exp] 441 / 3e-150 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 439 / 1e-149 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10030506 [exp] 421 / 3e-142 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10012860 [exp] 419 / 2e-141 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10025163 [exp] 408 / 4e-139 AT1G76430 431 / 5e-148 phosphate transporter 1;9 (.1) Lus10016635 [exp] 411 / 2e-138 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.002G005500.1 pacid=42777494 polypeptide=Potri.002G005500.1.p locus=Potri.002G005500 ID=Potri.002G005500.1.v4.1 annot-version=v4.1 ATGGCATTAAAAGTACTGTCTGCCCTTGATGCGGCAAAAATACAGTATTATCACTTCAAAGCCATAATTATTGCAGGCATGGGCCTCTTCACTGATGCCT ATGATCTCTTTTGTATCCCTCCAATCATGAAACTTCTTGGCCGTGTATACTACGAGGACAAACCTGGTCAAGACAAATACCAAATCCCACGAATTGTTCT TGCTACCATGTTAGGCACAGCCCTGCTGGGTACAGTGATTGGTCAACTAGTCTTTGGTAGACTTGGTGACCGAATGGGAAGGCGCCACGTATACGGTATC TCATTGATTCTCATGGTTTTCAGCTCCATTGGGTGCGGTTTCTCCTTCTGCCGGACCAAAACCTGTGTTCTTGTCAGTTTGGGGATTTTCAGGTTTTTTC TGGGACTTGGGATTGGTGGAGACTACCCTCTGTCGGCTACAATCATGTCTGAATTTGCTAATAAGAAGACACGTGGAGCTTTCGTAGCAGCTTTGTTTTC TATGCAAGGGCTTGGGATTCTGGCTAGTTCCATGGTGACTATGGTGGTATCAAAGATTTTTGAGGCTGCTGCTTCCAAGAATTTGTCAGGGAATCATACA CCAGAAGACGCTGACATTGTTTGGAGGTTGATTCTGATACTCGGTGCCGTCCCGGCTGGACTCACATATTATTGGCGCATGATGATGCCTGAAACAGCCA GGTACACAGCTCTGGTGGAGAATAATGTCCTGCAAGCAACCAAGGACATGGAGAAGGTCTTAGATGTTTCAATCAGCCGAATAGCCGAAGATGATCTCAT ATATCTGCAACAAGATCCACCGTCTTATTCCCTACTCTCCAAGCAGTTCTTCCGTCGCCACGGTGTTGATCTCTTCTCCTGTGCCACCACGTGGTTGCTT CTTGACATTGCTTTTTACAGTAGCAGCCTCTTCCAGTCCCAAATTTACAAGATGCATCTTGACTTGAAAAACACCAACGTTTATGAAGAAACTTTCAAAG TTGCTGTCTTCCAAGCCATGGTAGCACTTGTTGCTGCAATTCCAGGGTATTGGTTCACTGTCTATTTCATTGATCGTATTGGTAGAAGAAAAATCCAAAT GATGGGATTTCTCTGCATGGGTATAGTTTATTTTGCATTAGGAATCCCATACCAGTATTGGGGCGAACACAAAAATAAAGGCTTCCTATTCCTTTATGGT CTAACTTTCTTCTTTGCAAATTTTGGACCCAACACCACGACTTTTATTGTGCCGGCTGAGCTTTTTCCGGCGAGATTTAGATCAACTTGCCATGGAATTT CTGGGGCAGTGGGGAAGGTAGGTGCTTTCTTTGGGACTCTTGGGTTCTTGTGGGCTTCAAACCATAATGGCCCAGATGATCTTCCAAGAATCGGACCAAT GAGAATTGCTCTAGTAAGTTTGGGTGTGATTTGTCTCTTTGGAATGGCTGTGACATACTTGTTCACGCGAGAAACTAATGGGAGATCATTAGAGGAGAAT GAGAATGAGGACGAAAATACAGAGCTGTGCTTGTTCAGATGTCATATGGATGCTGATCGCCACCCAAATACATCTGTTCCTCAATAG
AA sequence Show only first row Show all	>Potri.002G005500.1 pacid=42777494 polypeptide=Potri.002G005500.1.p locus=Potri.002G005500 ID=Potri.002G005500.1.v4.1 annot-version=v4.1 MALKVLSALDAAKIQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRVYYEDKPGQDKYQIPRIVLATMLGTALLGTVIGQLVFGRLGDRMGRRHVYGI SLILMVFSSIGCGFSFCRTKTCVLVSLGIFRFFLGLGIGGDYPLSATIMSEFANKKTRGAFVAALFSMQGLGILASSMVTMVVSKIFEAAASKNLSGNHT PEDADIVWRLILILGAVPAGLTYYWRMMMPETARYTALVENNVLQATKDMEKVLDVSISRIAEDDLIYLQQDPPSYSLLSKQFFRRHGVDLFSCATTWLL LDIAFYSSSLFQSQIYKMHLDLKNTNVYEETFKVAVFQAMVALVAAIPGYWFTVYFIDRIGRRKIQMMGFLCMGIVYFALGIPYQYWGEHKNKGFLFLYG LTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAVGKVGAFFGTLGFLWASNHNGPDDLPRIGPMRIALVSLGVICLFGMAVTYLFTRETNGRSLEEN ENEDENTELCLFRCHMDADRHPNTSVPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	0	1	PtrPHT1-9
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	1.41	0.9755
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	1.41	0.9751
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	1.73	0.9741
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	3.46	0.9500
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	3.46	0.9726
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	7.07	0.9535
					Potri.005G100750 [exp]	8.24	0.9350
					Potri.011G070400 [exp]	8.94	0.9406
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	11.95	0.9448
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.003G133700 [exp]	12.68	0.9395

Compare expression of checked genes

Potri.002G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.