Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35300 904 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT1G20840 832 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT3G51490 803 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT1G30220 144 / 3e-36 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT3G18830 137 / 4e-34 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT4G16480 130 / 1e-31 ATINT4 inositol transporter 4 (.1) AT2G35740 130 / 2e-31 ATINT3 nositol transporter 3 (.1) AT2G43330 128 / 5e-31 ATINT1 inositol transporter 1 (.1) AT4G36670 126 / 2e-30 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16130 126 / 2e-30 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G255400 [exp] 1280 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.009G168500 [exp] 987 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 948 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G098900 [exp] 840 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.006G015300 [exp] 141 / 5e-35 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.004G151725 [exp] 138 / 1e-34 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 137 / 5e-34 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.016G010600 [exp] 137 / 1e-33 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.007G027900 [exp] 132 / 1e-32 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030726 [exp] 1022 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10013208 [exp] 998 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022988 [exp] 978 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 960 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 959 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 847 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10012709 [exp] 704 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10010886 [exp] 685 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10017561 [exp] 146 / 1e-36 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10028118 [exp] 145 / 2e-36 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G006200.1 pacid=42780182 polypeptide=Potri.002G006200.1.p locus=Potri.002G006200 ID=Potri.002G006200.1.v4.1 annot-version=v4.1 ATGAAGGGAGCATCTCTAGTGGCTATTGCTGCTTGCGTTGGTAACTTCTTGCAAGGATGGGATAATGCTACCATTGCTGGCGCTGTCATTTACGTCAAGA AAGACCTCAAGTTGCAATCGAGTGTGGAAGGTCTTGTTGTGGCCATGTCACTTATTGGAGCCGCTGCTATCACAACATGCTCAGGACCCATATCAGATTG GATTGGTCGGCGTCCAATGCTAATAAGCTCATCAATTCTCTACTTTGTCAGTGGTTTGGTAATGTTTTGGTCACCCAATGTTTATGTCTTGTGCATAGGA AGACTGTTGGATGGATTTGGCGTTGGTTTAGCAGTTACTCTTATTCCACTCTATATTTCTGAGACCGCCCCATCAGATATAAGGGGAATGTTAAATACTC TACCTCAGTTTGCCGGTTCAGGTGGCATGTTTCTGTCGTACTGTATGGTTTTTGGGATGTCATTGACAACTTCACCTAGTTGGAGGATGATGCTTGGAAT TCTTTCCATTCCTTCTTTACTATATTTTGTACTCACAGTGTTTTACTTGCCTGAATCTCCTCGATGGCTTGTAAGTAAAGGAAAGATGCTTGAGGCAAAG CAGGTTCTCCAGAGATTGCGTGGCAGGGAAGATGTTTCAGGCGAGATGGCTTTACTGGCTGAAGGTCTTGGTATCGGGGGTGAAACATCCATAGAAGAAT ACATAATAGGGCCTGCTGATGAAGTCGCTGATGGTCAAGAACCCATTGTTGATAAAGACAAAATCAAGTTATATGGACCTGAAGAAGGCCTTTCCTGGGT TGCTAAACCCGTAACTGGACAGAGTTCTCTTGCTCTTGTATCGCGCCAAGGAAGCATGGTGAACCAAGGCGTGCCTCTTATGGACCCTCTTGTGACTCTT TTTGGTAGTGTTCATGAAAAGCTCCCTGAGACAGGAAGCATGCGGAGCATGCTTTTCCCTAATTTTGGCAGCATGTTTAGTACAGCAGAACCTCACTTTA GGACTGAGCAGTGGGATGAAGAGAGTGTACAAAGAGAAGGTGAGGGCTACACATCAGAGGCTGGTGGTGAGGATTCTGATGACAATTTGCACAGTCCACT AATATCACGCCAGACGACAAGCATGGAAAAGGATATGGCCCACCCAACTTCCCATGGCAGTGCTCTGAGCATGAGACGGCATAGCAGTCTATTGCAAGGA GCTGGGGAGGCAGTTGACGGTACTGGCATTGGTGGGGGTTGGCAGTTGGCATGGAAATGGTCCGAGAGAGAAGGTGAGGATGGAAAGAAGGAAGGGGGGT TTAAAAGGATTTATTTGCACCAAGAGGGAGTTCCTGGATCCCGACGCGGGTCTGTTGTTTCACTTCCTGGTGGTGATGTTCCTGTTGAAGGTGAGTATAT CCAGGCTGCTGCTCTGGTAAGCCAGCCAGCTCTTTATTCAAAGGAGCTTATGGATCAGCATCCAGTTGGACCCGCAATGGTTCACCCATCTCAAACAGCT ACAAAAGCTCCGATATGGGCCGCTCTGCTTGAACCCGGAGTTAAGCATGCTTTGTTTGTTGGGATGGGAATTCAATTGCTTCAGCAGTTTGCTGGTATAA ATGGAGTTCTTTACTACACGCCTCAAATTCTTGAAGACGCAGGTGTTTCGGTTCTTCTTGCAAACTTGGGCCTCAGCACAAACTCTGCATCATTCCTTAT AAGTGCATTTACAAACCTCCTTATGCTTCCATGTATAGGAGTAGCGATGAAGCTTATGGATATCTCAGGGAGAAGGACGCTCCTACTTACCACAATTCCT GTGCTGATACTTTCCCTCGTCGTCTTAATTATTTTTGAACTAGTGACTGTGAGCGCAATCGTCAGTGCTGCAATCTTAACTGCCTGTGTTATCATCTTCA TCTGCTGTTTTGTGTCGGCTTATGGACCAATTCCTAATATCCTCTGCTCGGAGATCTTCCCGACAAGAGTCCGAGGCCTCTGCATTGCCATTTGTGCCAT GGTTTACTGGATTGGAGACATCATTGTCACCTACACACTGCCTGTGATGCTAACTTCCATCGGCCTAGTTGGTATCTTCAGCATTTACGCCGCTGTGTGC GTCATCTCTTGGATCTTTGTTTTCTTGAAGGTCCCAGAGACCAAAGGAATGCCTCTTGAAGTCATTACTGAGTTCTTTGCTGTGGGCGCAAGACAAGCTG CTGCTGCCAAGAATTAA
AA sequence Show only first row Show all	>Potri.002G006200.1 pacid=42780182 polypeptide=Potri.002G006200.1.p locus=Potri.002G006200 ID=Potri.002G006200.1.v4.1 annot-version=v4.1 MKGASLVAIAACVGNFLQGWDNATIAGAVIYVKKDLKLQSSVEGLVVAMSLIGAAAITTCSGPISDWIGRRPMLISSSILYFVSGLVMFWSPNVYVLCIG RLLDGFGVGLAVTLIPLYISETAPSDIRGMLNTLPQFAGSGGMFLSYCMVFGMSLTTSPSWRMMLGILSIPSLLYFVLTVFYLPESPRWLVSKGKMLEAK QVLQRLRGREDVSGEMALLAEGLGIGGETSIEEYIIGPADEVADGQEPIVDKDKIKLYGPEEGLSWVAKPVTGQSSLALVSRQGSMVNQGVPLMDPLVTL FGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHFRTEQWDEESVQREGEGYTSEAGGEDSDDNLHSPLISRQTTSMEKDMAHPTSHGSALSMRRHSSLLQG AGEAVDGTGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHQEGVPGSRRGSVVSLPGGDVPVEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSQTA TKAPIWAALLEPGVKHALFVGMGIQLLQQFAGINGVLYYTPQILEDAGVSVLLANLGLSTNSASFLISAFTNLLMLPCIGVAMKLMDISGRRTLLLTTIP VLILSLVVLIIFELVTVSAIVSAAILTACVIIFICCFVSAYGPIPNILCSEIFPTRVRGLCIAICAMVYWIGDIIVTYTLPVMLTSIGLVGIFSIYAAVC VISWIFVFLKVPETKGMPLEVITEFFAVGARQAAAAKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.002G006200 [exp]	0	1
					Potri.003G054001 [exp]	1.41	0.9230
AT3G48480			Cysteine proteinases superfami...		Potri.010G180300 [exp]	3.74	0.8911
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048200 [exp]	4.35	0.8642
AT5G53500			Transducin/WD40 repeat-like su...		Potri.002G174100 [exp]	6.00	0.8872
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Potri.014G180100 [exp]	7.74	0.8706	MRP9.1
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	14.38	0.8762
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.002G165300 [exp]	17.40	0.8281
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.004G163600 [exp]	18.13	0.8798
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	19.59	0.8767
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Potri.001G353500 [exp]	21.14	0.8182

Compare expression of checked genes

Potri.002G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.