Plant FIBer expression Database

Potri.002G006600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76400 817 / 0 Ribophorin I (.1)
AT2G01720 454 / 5e-155 Ribophorin I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G255000
[exp]
1093 / 0 AT1G76400 816 / 0.0 Ribophorin I (.1)
Potri.010G223500
[exp]
499 / 1e-172 AT2G01720 683 / 0.0 Ribophorin I (.1)
Potri.008G038700
[exp]
493 / 2e-170 AT2G01720 677 / 0.0 Ribophorin I (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025159
[exp]
899 / 0 AT1G76400 843 / 0.0 Ribophorin I (.1)
Lus10016038
[exp]
609 / 0 AT1G76400 595 / 0.0 Ribophorin I (.1)
Lus10023524
[exp]
467 / 3e-160 AT2G01720 650 / 0.0 Ribophorin I (.1)
Lus10040410
[exp]
466 / 2e-159 AT2G01720 645 / 0.0 Ribophorin I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04597 Ribophorin_I Ribophorin I
Representative CDS sequence
>Potri.002G006600.1 pacid=42778128 polypeptide=Potri.002G006600.1.p locus=Potri.002G006600 ID=Potri.002G006600.1.v4.1 annot-version=v4.1
ATGGGGTTACGATTTGATTTACTTTCTTTGTTTACGACACTTGCTCTGCTCTCAACAACAACAACTACTGTTCTTTCCGATGTCATTCTCTCCAAAGTCG
ATCGCCGTATTGATTTGACTTCACAGATTGTGCGCGTTACCTCCACATTAAAGGTGGAGAATGCTGGTCCTGGTCCAGTTTCTGAGATTTTGCTTACTTT
TCCTGAGGTTCAGGCCAAAGATTTGGCATACTTGACAGCGGCACTTAATGAGGGGAAAGGGAAAGGGAGAAACTCAGGGAGTAGTCTCCCTATAAATGTT
GTCAATCCAGAGGGAATGCCCCCTTCCCTGACTTGTCATTCAATATCATTACCCAAGGCTTTGGCTGAGGGGGATAGTTTGACTATAGTTGTCTTAGCAG
TATTTACTCATGCATTACGGCCGTTTCCTGAGGAAATTACGCAAGCTGATATTCAGCTAGTTTTGTTCCAGGATACTGCTCACTATCTTTCCCCTTATGC
GGTTAACGTTCAGTCCCTTACTGTTAAATTGCCCAAGGCTAGAATCGAGACGTATACGAAGTTGGAGAATACAAATGTACACGGCTCTGATATCAAATAT
GGTCCATATCAAAACCTGCCTCCCTTTTCGTATGCACCCGTAGCTGTTCACTTTGAAACCAATCAACCATTTGCTGTTGCTCAAGAGTTGGTGAGAGAGA
TAGAAATTTCCCATTGGGGCAATGTGCAAGTTACTGAACATTACAACATTGTCCATGGAGGTGCTAAAAGCAAGGGTGAATTTTCCAGGCTTGACTTTCA
GGCTAGACCCCACCTTCGAGGTGCGTCAGCCTTCAGGAATCTTGTTGCAAAATTGCCGCCAAGGGCTCATTCCATTTATTATAGGGATGAGATTGGAAAT
ATATCAACATCTAATGTTTGGGGTGATCCTAAGAAGACAGAACTATTGATTGAACCTAGATATCCATTGTTTGGAGGTTGGAGAACTACTTTTACTATTG
GATATGGCTTGCCACTTCAAGATTTTTTATTTGAGTCAGAGGGAAAACGTTTCATTAACTTCTCTTTTGGCTCCCCTATAAATGATTTGGTCATTGATAA
TATCATTGTGAAGGTTGTTTTGCCAGAGGGATCAAATGATATATTTACTTCCACCCCATTTCCGGCAAAACAAGGACAAGAGACCAAAATTTCTCACTTA
GATGTTGTTGGTAGACCAGTTGTTGTGCTGGAAAAGACCAATGTTGTTCCTGAACATAACCAGTATTTCCAGGTCTATTACAGGTTCAACAGCCTTTCGA
TGCTTAGGGAGCCATTTATGTTAATTTCTGGATTCTTCTTCATTTTTGTTGCTTGCATCGTATACATGCATGTAGACATGTCAATCTCGAAGTCCTCTGC
TTCTTATTTGGCAAAAATGCAGTGGGATGAGGTGCGGGCAACAATTCAGCAAGTCCAAAGTGTCATCAACCAATGCTTGTATACGCATGAAAAGCTAGAA
GCATCACTGCGTGATCTTTCTAGAACTGGGGATGTTCAAGCTTGTAAAACTGCTCGAAAGACAGCTGACAGTTTGTTGAAAGAGTATTCCAAAGAGTTAA
AGCCCTTGCTTTCATTCTTGCAATCTTCTCCTCAGGCTACTCAAATATTACCTAAGGTGGAGGAACTGGTGGCAAAGGAGAGGGAATTGCAAGAGAGGCT
GATAGCGAAGCATTCAACCATAGTGGACTGCTATGAGAAGAAGATTGGAGGAAGGGAACTTGAGAATCGGGTTGCGTCGCAGCAACAGAAAGTTGTAGTT
TTGAAGCAGGAGGTTGAAGACCTTCTTGATTACATTGAAGAGATATAG
AA sequence
>Potri.002G006600.1 pacid=42778128 polypeptide=Potri.002G006600.1.p locus=Potri.002G006600 ID=Potri.002G006600.1.v4.1 annot-version=v4.1
MGLRFDLLSLFTTLALLSTTTTTVLSDVILSKVDRRIDLTSQIVRVTSTLKVENAGPGPVSEILLTFPEVQAKDLAYLTAALNEGKGKGRNSGSSLPINV
VNPEGMPPSLTCHSISLPKALAEGDSLTIVVLAVFTHALRPFPEEITQADIQLVLFQDTAHYLSPYAVNVQSLTVKLPKARIETYTKLENTNVHGSDIKY
GPYQNLPPFSYAPVAVHFETNQPFAVAQELVREIEISHWGNVQVTEHYNIVHGGAKSKGEFSRLDFQARPHLRGASAFRNLVAKLPPRAHSIYYRDEIGN
ISTSNVWGDPKKTELLIEPRYPLFGGWRTTFTIGYGLPLQDFLFESEGKRFINFSFGSPINDLVIDNIIVKVVLPEGSNDIFTSTPFPAKQGQETKISHL
DVVGRPVVVLEKTNVVPEHNQYFQVYYRFNSLSMLREPFMLISGFFFIFVACIVYMHVDMSISKSSASYLAKMQWDEVRATIQQVQSVINQCLYTHEKLE
ASLRDLSRTGDVQACKTARKTADSLLKEYSKELKPLLSFLQSSPQATQILPKVEELVAKERELQERLIAKHSTIVDCYEKKIGGRELENRVASQQQKVVV
LKQEVEDLLDYIEEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76400 Ribophorin I (.1) Potri.002G006600
[exp]
0 1
AT5G59410 Rab5-interacting family protei... Potri.001G241500
[exp]
1.41 0.9573
AT2G16595 Translocon-associated protein ... Potri.004G168500
[exp]
6.32 0.9406
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Potri.013G042100
[exp]
6.32 0.9102
AT1G09580 emp24/gp25L/p24 family/GOLD fa... Potri.001G210900
[exp]
6.92 0.9377
AT3G52590 HAP4, ERD16, UB... HAPLESS 4, EARLY-RESPONSIVE TO... Potri.016G077000
[exp]
7.34 0.9395 UBQ1.1
AT5G26360 TCP-1/cpn60 chaperonin family ... Potri.018G138200
[exp]
7.41 0.9269
AT1G36050 Endoplasmic reticulum vesicle ... Potri.002G094400
[exp]
8.36 0.9304
AT2G47470 ATPDI11, ATPDIL... UNFERTILIZED EMBRYO SAC 5, MAT... Potri.002G198300
[exp]
8.66 0.9242
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Potri.006G136500
[exp]
8.83 0.9250 TIF3.2
AT2G03430 Ankyrin repeat family protein ... Potri.010G161300
[exp]
9.89 0.8912

Potri.002G006600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.