Plant FIBer expression Database

Potri.002G006800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G006800.2 pacid=42778574 polypeptide=Potri.002G006800.2.p locus=Potri.002G006800 ID=Potri.002G006800.2.v4.1 annot-version=v4.1
ATGCCTCCAGGATTGAAAGACCAAGATTATGAAGGAGAGTCTAAGCCAGATGAAGGAGAGTTGCATGTGTGCAATATGAAGCCAGAGAAATCGAAGAAAA
CTGGCATGCCACCAGGTATAATGATGGTGCCGATCAAGATTCAAAAGCTGATGCCATGGATTGTGCATTTGAAAACTTTGGCATCATCAAATACTTGTGT
TCACATCCCTTTCATCCCTGCCTTAGCTCCTCTCAGAAGCAGTAATCCTTCTATGTATCTGTGTGCACAATATGAGGAGGTTGTCTTGAGCAAGAACTTG
GCTTCATTGACCAGGCATGCATGGAGTGCTTATCGCTTGTAA
AA sequence
>Potri.002G006800.2 pacid=42778574 polypeptide=Potri.002G006800.2.p locus=Potri.002G006800 ID=Potri.002G006800.2.v4.1 annot-version=v4.1
MPPGLKDQDYEGESKPDEGELHVCNMKPEKSKKTGMPPGIMMVPIKIQKLMPWIVHLKTLASSNTCVHIPFIPALAPLRSSNPSMYLCAQYEEVVLSKNL
ASLTRHAWSAYRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G006800
[exp]
0 1
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.004G069700
[exp]
4.89 0.8191
AT1G04710 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, pe... Potri.013G097500
[exp]
16.37 0.8184 PED1.2
ATCG00500 ATCG00500.1, AC... acetyl-CoA carboxylase carboxy... Potri.005G150200
[exp]
23.49 0.8071
AT3G15270 SBP SPL5 squamosa promoter binding prot... Potri.007G138800
[exp]
25.29 0.7525
Potri.007G062562
[exp]
28.39 0.7959
ATMG00580 ATMG00580.1, NA... NADH dehydrogenase subunit 4 (... Potri.007G061861
[exp]
29.52 0.8013
ATMG00520 ATMG00520.1, MA... Intron maturase, type II famil... Potri.007G062302
[exp]
30.74 0.8064
AT5G52340 ATEXO70A2 exocyst subunit exo70 family p... Potri.006G203900
[exp]
35.49 0.7399
AT5G52060 ATBAG1 BCL-2-associated athanogene 1 ... Potri.012G133400
[exp]
41.56 0.7153
AT5G24580 Heavy metal transport/detoxifi... Potri.012G007300
[exp]
44.36 0.7496

Potri.002G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.