Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11310 448 / 9e-152 PMR2, ATMLO2, MLO2 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) AT2G39200 439 / 2e-148 ATMLO12, MLO12 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) AT1G61560 434 / 3e-146 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) AT2G17430 412 / 5e-138 NTA, ATMLO7, MLO7 NORTIA, MILDEW RESISTANCE LOCUS O 7, Seven transmembrane MLO family protein (.1) AT2G17480 405 / 7e-135 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) AT2G33670 401 / 2e-134 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) AT1G42560 398 / 8e-134 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1) AT5G65970 397 / 5e-132 ATMLO10, MLO10 MILDEW RESISTANCE LOCUS O 10, Seven transmembrane MLO family protein (.1) AT3G45290 373 / 2e-123 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) AT2G44110 325 / 7e-105 ATMLO15, MLO15 MILDEW RESISTANCE LOCUS O 15, Seven transmembrane MLO family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254300 [exp] 849 / 0 AT1G11310 461 / 3e-157 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) Potri.007G064200 [exp] 683 / 0 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.009G011900 [exp] 483 / 4e-165 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.005G099200 [exp] 446 / 8e-151 AT2G17480 624 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Potri.008G041400 [exp] 445 / 2e-150 AT1G61560 768 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.010G220500 [exp] 441 / 5e-149 AT1G61560 743 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.007G064300 [exp] 414 / 1e-138 AT2G17480 669 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Potri.003G002500 [exp] 411 / 9e-138 AT3G45290 551 / 0.0 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Potri.016G088000 [exp] 407 / 3e-137 AT1G61560 576 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040388 [exp] 449 / 1e-151 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10019630 [exp] 444 / 1e-149 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10023506 [exp] 442 / 3e-148 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10036519 [exp] 440 / 4e-148 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10041410 [exp] 436 / 9e-147 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10022096 [exp] 426 / 7e-143 AT2G17480 687 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10030729 [exp] 409 / 1e-137 AT2G33670 628 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) Lus10036121 [exp] 387 / 2e-128 AT3G45290 542 / 0.0 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Lus10036120 [exp] 367 / 3e-120 AT1G61560 599 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10013211 [exp] 349 / 1e-113 AT2G33670 623 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03094 [poplar] [flax] Mlo Mlo family
Representative CDS sequence Show only first row Show all	>Potri.002G007000.4 pacid=42777968 polypeptide=Potri.002G007000.4.p locus=Potri.002G007000 ID=Potri.002G007000.4.v4.1 annot-version=v4.1 ATGGCAGCTGGTTCTTATGGAGACAAGACCTTGCAAAACACACCTACATGGGCTGTAGCGGCAGTTTGTGCAGTGTTTGTGGTCTTATCTGTTCTCATAG AACATGGGATTCAGTCGTTAGGAAAGTGGTTTCAAAAACGCCAAAAGAAGGCCATGAGTGAAGCTTTGGAGAAAATTAAAGCTGAATTAATGCTACTGGG CTTCATATCGTTGCTAATTACTGTGGGTACAAGCGCCATCTTAAAGATATGCATCCCTGAGAAATACGAAAACGTCATGCTTCCCTGCAAATATGATTAC GTTGGGGACAACTATAAAGATAAAAATGGTGGTAAAGGAGGTGACGGCAATGATGGAGGTGATCATAAGAGGAAACTATTTTCATTTGCCGGAAATGTAG CAATCCACAGAGTTTTAGCGGCAGCTGGCGGCGGCGGCGGCGGCTATTGCTCCAAGGGTAAAGTTTCATTGATTTCGCAAACAGGAGTGCACCAATTGCA CATATTTCTATTTGTTCTTGCCATTTTTCATGTTCTTTACAGTGTCGTTACTATGGCACTGGGGCAAGCAAAAATGAAGAAATGGAAGGCTTGGGAATTG GAGACTTCTTCAATAGAGTACCAGTTTACAAACGATCCAACAAGATTCAGACTTGCTCGCCAGACCTCCTTCGTGAGGCGTCACTCTGGCATCTCCACAG CTCCAGGAATCAAATGGATTGTTGCGTTCTTCAGGCAATTCACTGGTTCGGTAACGAAGGTGGATTACATGACTATGCGACATGGATTTATTAACGCACA TTTTGCTCCAAATAGCAAGTTTGATTTCCACAGGTACATCAAAAGATGCATGGAAGATGACTTCAAGGTGGTTGTGGGCATTAGCTTGCCACTGTGGGTT TTTGCCATCCTCTTTTTGCTGTTGAATGTCTACAGATGGTACACGCTCACCTGGTTGACAGTTGTGCCTCTAGTTATACTTCTTTTGGTGGGTACTAAAC TTGAACTAGTTATCATGGAAATGGCTCAAGATATCCAAGACAGAAGTCATGTTGTTAGAGGAGTTCCAGTGGTTCAGCCTAACAACAAGTTCTTCTGGTT TAATCGACCCCATTGGATTCTCCTCTTGATACATTACACACTGTTCCAGAATGCGTTTCAAATGGCATTTTTCTTGTGGACATGGTATGAATTCGGGATC AGATCTTGTTTCCATGAAAACCTGGCGGTGATTTTGACAAGGGTTTTCCTTGGATTGGTCCTTCAGTTCGTGTGTAGCTATATAACATTCCCTCTCTATT CATTGGTTACACAAATGGGTTCTCACATGAAGAAAGCAATATTTGAGGAACAAACAGCAAGAGCACTTAGAAAATGGCAAAAGGCAGCAAAGCTAAGAAA GAAATCAAGACAATCAGGAGGTGATCAAGGTGGTTCTAGTCCAGGGTTCATGAGTCAAGGTGGTTCCAGTCCAGGGTTCATGAGTGTTGGTTCCACTCCA AGCCGAGGTACATCGCCTATACATTTGCTTCACAAGTACAGGCCAAGTCAACCGGATGTCGAAAGTGTCATTAGTTCGGCGATGTCCTACGCATCCGATA CTGAGCTCTCGGAGCTTGATGCTTCCCCTGATCATGATAGGCACGAGTCAAGAAAACAAGATCAACATCAAGAACAAAGTGAAGCCCATAGTGCTGACTT TTCTTTTGTCAAACTTTGA
AA sequence Show only first row Show all	>Potri.002G007000.4 pacid=42777968 polypeptide=Potri.002G007000.4.p locus=Potri.002G007000 ID=Potri.002G007000.4.v4.1 annot-version=v4.1 MAAGSYGDKTLQNTPTWAVAAVCAVFVVLSVLIEHGIQSLGKWFQKRQKKAMSEALEKIKAELMLLGFISLLITVGTSAILKICIPEKYENVMLPCKYDY VGDNYKDKNGGKGGDGNDGGDHKRKLFSFAGNVAIHRVLAAAGGGGGGYCSKGKVSLISQTGVHQLHIFLFVLAIFHVLYSVVTMALGQAKMKKWKAWEL ETSSIEYQFTNDPTRFRLARQTSFVRRHSGISTAPGIKWIVAFFRQFTGSVTKVDYMTMRHGFINAHFAPNSKFDFHRYIKRCMEDDFKVVVGISLPLWV FAILFLLLNVYRWYTLTWLTVVPLVILLLVGTKLELVIMEMAQDIQDRSHVVRGVPVVQPNNKFFWFNRPHWILLLIHYTLFQNAFQMAFFLWTWYEFGI RSCFHENLAVILTRVFLGLVLQFVCSYITFPLYSLVTQMGSHMKKAIFEEQTARALRKWQKAAKLRKKSRQSGGDQGGSSPGFMSQGGSSPGFMSVGSTP SRGTSPIHLLHKYRPSQPDVESVISSAMSYASDTELSELDASPDHDRHESRKQDQHQEQSEAHSADFSFVKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	0	1
					Potri.013G045500 [exp]	1.00	0.9868
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191500 [exp]	2.00	0.9740
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143500 [exp]	3.00	0.9728
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	3.46	0.9685
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134475 [exp]	4.47	0.9673
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G095000 [exp]	5.47	0.9442
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134400 [exp]	5.65	0.9612
AT1G31710			Copper amine oxidase family pr...		Potri.010G088800 [exp]	6.08	0.9204	DAO.2
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G081200 [exp]	6.85	0.9164
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	7.34	0.9595

Compare expression of checked genes

Potri.002G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.