Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42970 690 / 0 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 509 / 0 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 498 / 1e-176 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) AT1G79530 292 / 2e-95 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 284 / 4e-92 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT3G04120 260 / 5e-84 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 258 / 4e-83 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254100 [exp] 767 / 0 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 468 / 2e-164 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.014G140500 [exp] 466 / 2e-163 AT3G26650 622 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.010G172400 [exp] 279 / 4e-90 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.008G083900 [exp] 276 / 3e-89 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.012G094100 [exp] 268 / 4e-87 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.015G091400 [exp] 262 / 1e-84 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.001G335800 [exp] 261 / 3e-84 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.010G055400 [exp] 254 / 2e-81 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016033 [exp] 676 / 0 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10012243 [exp] 672 / 0 AT1G42970 759 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10041502 [exp] 483 / 3e-170 AT1G12900 650 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10012591 [exp] 483 / 2e-169 AT1G12900 654 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10009602 [exp] 279 / 5e-90 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 278 / 2e-89 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10011375 [exp] 266 / 5e-86 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 266 / 5e-86 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 265 / 1e-85 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10015826 [exp] 261 / 2e-84 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00044 [poplar] [flax] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0063 [poplar] [flax] PF02672 [poplar] [flax] CP12 CP12 domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02800 [poplar] [flax] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G007100.3 pacid=42776714 polypeptide=Potri.002G007100.3.p locus=Potri.002G007100 ID=Potri.002G007100.3.v4.1 annot-version=v4.1 ATGCAGAGGCTAGAAGTGGCTGAGTTTTCTGGTCTTCGAGCCAGTTCATGTGTAACCTATGCAAAGAACGCTAGTGAGGGATCCTTCTTTGATATGGTGG CTTCCCAACTTGCTCCCAAGGTTGCAGTATCAACTCCTGTTAGAGCAGAAACTGTATCCAAATTGAAGGTGGCTATCAACGGATTTGGACGCATTGGCAG GAACTTCCTGCGATGCTGGCACGGTCGCAAAGACTCGCCCCTTGATGTAATTGTTGTCAACGACAGTGGTGGTGTCAAGAACGCTTCCCACCTATTGAAA TATGATTCCATGCTTGGAACTTTCAAGGCAGAGGTGAAAATTGTGGACAACGAGACCATCAGTGTTGATGGCAAGCCCATAAAGGTTGTTTCCAACAGAG ACCCTCTTAAGCTTCCTTGGGCTGAGCTCGGGATAGACATTGTTATTGAGGGAACAGGAGTTTTTGTAGATGGTCCTGGTGCTGGGAAACATATTCAAGC TGGTGCCAAGAAAGTTATCATCACTGCTCCAGCCAAAGGTGCTGATATTCCAACCTATGTTGTTGGTGTTAATGAAAAGGATTATGACCATGAGGTTTCC AACATTGTAAGCAATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAAGTCATGGATGAGGAATTTGGCATTGTCAAGGGAACAATGACAACCA CCCACTCCTACACTGGAGATCAGAGGCTTTTGGATGCTTCACACCGAGACTTGAGAAGAGCCAGGGCTGCCGCATTGAACATAGTCCCAACAAGCACTGG TGCAGCCAAGGCTGTATCTCTCGTGCTACCTCAGCTCAAGGGCAAGCTCAATGGCATTGCACTCCGTGTCCCAACCCCTAATGTCTCAGTTGTTGACCTT GTTGTGAATGTTGAGAAGAAGGGCATCACAGCAGAAGATGTCAATGCAGCCTTCAGAAAGGCAGCTGAGGGACCATTGAAGGGTGTATTGGACGTGTGTG ATGTTCCTCTCGTCTCTGTCGACTTCCGGTGCTCTGATGTTTCTTCAACCATTGACTCTTCATTGACCATGGTCATGGGAGATGATATGATCAAGGTTGT CGCTTGGTACGACAATGAATGGGGATACAGCCAAAGGGTAGTTGATTTAGGTCATCTTGTAGCCAGCAAGTGGCCAGGTGTGGCTGCGGCGGGAAGCGGA GACCCATTGGAGGACTTCTGCAAGACAAACCCAGCTGATGAGGAATGCAAAGTCTATGAAGCTTAG
AA sequence Show only first row Show all	>Potri.002G007100.3 pacid=42776714 polypeptide=Potri.002G007100.3.p locus=Potri.002G007100 ID=Potri.002G007100.3.v4.1 annot-version=v4.1 MQRLEVAEFSGLRASSCVTYAKNASEGSFFDMVASQLAPKVAVSTPVRAETVSKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVNDSGGVKNASHLLK YDSMLGTFKAEVKIVDNETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVS NIVSNASCTTNCLAPFVKVMDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDL VVNVEKKGITAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMIKVVAWYDNEWGYSQRVVDLGHLVASKWPGVAAAGSG DPLEDFCKTNPADEECKVYEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.002G007100 [exp]	0	1
					Potri.009G008300 [exp]	1.73	0.9819
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155866 [exp]	3.16	0.9810
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	3.46	0.9781	Pt-ALDH11.1
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	4.47	0.9742	GC1.1
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	5.47	0.9731
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G017300 [exp]	8.06	0.9614
AT3G15570			Phototropic-responsive NPH3 fa...		Potri.003G058800 [exp]	8.36	0.9726
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	8.94	0.9694
AT1G72030			Acyl-CoA N-acyltransferases (N...		Potri.005G054600 [exp]	9.21	0.9592
AT4G39230			NmrA-like negative transcripti...		Potri.013G104000 [exp]	9.94	0.9680

Compare expression of checked genes

Potri.002G007100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.