Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24360 198 / 2e-59 AtIRE1b, ATIRE1-1 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) AT2G17520 192 / 1e-57 ATIRE1-2, IRE1A ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) AT3G11870 119 / 1e-31 Endoribonuclease/protein kinase IRE1-like (.1) AT2G05060 64 / 2e-12 Protein kinase superfamily protein (.1) AT5G60550 62 / 2e-11 ATSNAK1, GRIK2 geminivirus rep interacting kinase 2 (.1) AT5G58950 62 / 2e-11 Protein kinase superfamily protein (.1) AT3G53380 61 / 2e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT1G75640 61 / 3e-11 Leucine-rich receptor-like protein kinase family protein (.1) AT4G17660 60 / 5e-11 Protein kinase superfamily protein (.1) AT5G47070 60 / 6e-11 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254000 [exp] 296 / 1e-95 AT5G24360 722 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.007G059000 [exp] 214 / 2e-65 AT2G17520 673 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Potri.005G235100 [exp] 68 / 2e-13 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 67 / 4e-13 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G184200 [exp] 64 / 2e-12 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.005G082200 [exp] 62 / 2e-11 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 62 / 2e-11 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.009G012900 [exp] 61 / 2e-11 AT5G60550 535 / 0.0 geminivirus rep interacting kinase 2 (.1) Potri.006G128500 [exp] 61 / 4e-11 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013212 [exp] 257 / 6e-81 AT5G24360 701 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10030730 [exp] 251 / 6e-79 AT5G24360 706 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10035979 [exp] 201 / 1e-60 AT2G17520 618 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Lus10004266 [exp] 67 / 3e-13 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042177 [exp] 66 / 7e-13 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033924 [exp] 65 / 2e-12 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033926 [exp] 63 / 7e-12 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10029769 [exp] 60 / 1e-10 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028067 [exp] 59 / 2e-10 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042795 [exp] 59 / 2e-10 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G007201.1 pacid=42776828 polypeptide=Potri.002G007201.1.p locus=Potri.002G007201 ID=Potri.002G007201.1.v4.1 annot-version=v4.1 ATGGTTCGACTACATTCAATGCCAGAACATAACAGGAATGTTGAATTGTGGAAGGCCAATGGCTATCCTTCGGCACAATTGTTAAAATTAATGAGAGATG TGATTTCTGGGCTTGCCCATTTGCATGAACTTGGAATTATACTCGGGGACTTAAAGCCTCAGAATGTTTTGATTATCAGTGAGAAATCTTTCTGTGCAAA GCTTTCAGATATGGGCATTAGCAAGTGCCTTCGTTGGGACATGTCTTCCTTGACCCAACATCCAACTGGTTATGGGAGCTCAGGCTGGCAAGCACCTGAA CAACTACTCCGTGGATGCCAAACACGTGCATTAGATGTGTTCAGTTTAGGCTGTGTTCTATTTTTCTGTACCACAGGGGGTAAGCACCCTTTTGGTGATA ATATTGAACGTGATGTAAATATTGTCAATGACCGGAAGGACCTATTCTTAGTAGAGAATATACAGAAGCTCTGGATCTTTTCTCTTGTCTCTTGGATCCT GACCCAGAGAAGAGGCCAATAG
AA sequence Show only first row Show all	>Potri.002G007201.1 pacid=42776828 polypeptide=Potri.002G007201.1.p locus=Potri.002G007201 ID=Potri.002G007201.1.v4.1 annot-version=v4.1 MVRLHSMPEHNRNVELWKANGYPSAQLLKLMRDVISGLAHLHELGIILGDLKPQNVLIISEKSFCAKLSDMGISKCLRWDMSSLTQHPTGYGSSGWQAPE QLLRGCQTRALDVFSLGCVLFFCTTGGKHPFGDNIERDVNIVNDRKDLFLVENIQKLWIFSLVSWILTQRRGQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.002G007201 [exp]	0	1
AT5G51290			Diacylglycerol kinase family p...		Potri.004G233300 [exp]	14.96	0.8347
AT4G02550			unknown protein		Potri.009G022650 [exp]	16.79	0.8359
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	18.97	0.8456
					Potri.017G020864 [exp]	31.08	0.8294
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220150 [exp]	32.93	0.8263
AT1G22970			unknown protein		Potri.010G117100 [exp]	34.92	0.8322
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	40.62	0.8210
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103400 [exp]	41.49	0.7264
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	51.11	0.8203
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Potri.010G113500 [exp]	51.53	0.8008

Compare expression of checked genes

Potri.002G007201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.