Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29360 338 / 2e-111 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 333 / 7e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 324 / 1e-105 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 323 / 4e-105 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 321 / 4e-105 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 321 / 1e-104 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 320 / 2e-104 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 318 / 3e-103 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 309 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 292 / 3e-93 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253900 [exp] 530 / 0 AT5G56590 191 / 8e-56 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 338 / 3e-111 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 334 / 4e-110 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 329 / 5e-108 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 326 / 4e-107 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.009G115400 [exp] 323 / 4e-106 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 319 / 4e-104 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 314 / 1e-102 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 314 / 2e-102 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016032 [exp] 664 / 0 AT5G24318 333 / 3e-110 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 333 / 6e-110 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 330 / 7e-109 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 330 / 2e-108 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 329 / 4e-108 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 325 / 1e-106 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 318 / 7e-104 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 314 / 1e-102 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10013465 [exp] 313 / 2e-101 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 311 / 6e-101 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.002G007300.2 pacid=42778125 polypeptide=Potri.002G007300.2.p locus=Potri.002G007300 ID=Potri.002G007300.2.v4.1 annot-version=v4.1 ATGGCTCCTGCCTCTCTCCTTGTCCTTCTCTTCCTTGCAACTCTCAGCCCATTTCCAAACGTTTCTGCTGTCGGTGTGAACTACGGCACTCTTGGAAACA ACTTGCCATCACCAAAAAAAGTAGCTCAGCTTCTTCAATCCACACTCATTGACAAGGTGAAGATCTATGACACAAACCCTGAAATCCTCGGGGCATTTTC CAACACCGGAATTGACCTCATCGTAGCAGTCGAAAACTACCACGTGGCAAACATCAGCACTGACACATCAGCTGCCGATGAATGGCTCACCAATCGCGTG GTTCCCTTTATTCCTGCCACTTCCATTGTTGCCATTGCTGTTGGTAATGAGTATTTAACAACAGATCCTGATCACTTGAAGCCAAATGCACTTATCCAGG CCATGCAAAACTTGCATGCTGTTTTAGTACAACGCGGACTTGACCGAAAAATTAAGGTCACAACTCCACATAGCATGGCAGTTCTTGCTTCCTCATTCCC TCCTTCAGCTTCAACTTTTGCCACTACACTCATGCCTGTTATGACCTCAATTGTAGGGTTTTTGGCTGACACAGGTGCCCCTTTTATGGTCAATGCTTAC CCTTATTTTGCTTATAGGGACAATCCTGGTATGGTTGACCTAGAGTATGCCTTACTAGGGAATGCAAGCGGGGTTCGTGACCCTAAAGGATATGTGTACA GCAATATGTTAGATGCCCAAGTTGACGCTGTTAGGTCAGCTATTATTGCATTAGGGTTTGGTAATCGGACAGTTGAGATGACCATATCAGAATCCGGGTG GCCATCAAAGGGTGAATCAGGTGATGACGCTGCCACACCAGAAAACGCAAAGACTTACAATACTAGGTTGATTGAACGTGCACAGTCTAATAAAGGGACA CCAATGAGTCCTAAAAAGAACATAGAGATATTTGTGTTTGCTTTGTTTAATGAGAATAAAAAAGAGGGTGGTGTTAGTGAGAGGAATTTTGGGATGTTTA ATGGGGATGGATCTAAGGTGTATGAAGTGGATTTGAGCTGCCAGTTTTGCAGTAGCAATGGAGGGACATTAGGGTTTGGGGAGAAGATGTCAAGTGGAGT AAGAGGTCCTTCAGTTTGGTGTGTGGCTAAACCTCATGCTGATGAGAAGGTGCTTCAAGCTGTGCTGGATTTTTGCTGCGGACCAGGTGGTGTGGATTGC AGAGAGATTTATGAAAGTGGTGATTGTTTTGCACCAGATAAGCTTCATGCACATGCATCCTATGCCATGAATGTTTATTATCAAATCCATGGGAGAAACT ACTGGAATTGTGACTTCAAGGGCACTGGACTTGTTACTTTCAGCGATCCAAGTAAGAATTCAAGAATTTTCCCTTCTCATTTTCCTACTTCAGAAGGTGT TTTAGTTCTTGTTAAAACCAGTTTTATTAAACGTGTCCGGTCCGGCTGGATAAACCCGTAA
AA sequence Show only first row Show all	>Potri.002G007300.2 pacid=42778125 polypeptide=Potri.002G007300.2.p locus=Potri.002G007300 ID=Potri.002G007300.2.v4.1 annot-version=v4.1 MAPASLLVLLFLATLSPFPNVSAVGVNYGTLGNNLPSPKKVAQLLQSTLIDKVKIYDTNPEILGAFSNTGIDLIVAVENYHVANISTDTSAADEWLTNRV VPFIPATSIVAIAVGNEYLTTDPDHLKPNALIQAMQNLHAVLVQRGLDRKIKVTTPHSMAVLASSFPPSASTFATTLMPVMTSIVGFLADTGAPFMVNAY PYFAYRDNPGMVDLEYALLGNASGVRDPKGYVYSNMLDAQVDAVRSAIIALGFGNRTVEMTISESGWPSKGESGDDAATPENAKTYNTRLIERAQSNKGT PMSPKKNIEIFVFALFNENKKEGGVSERNFGMFNGDGSKVYEVDLSCQFCSSNGGTLGFGEKMSSGVRGPSVWCVAKPHADEKVLQAVLDFCCGPGGVDC REIYESGDCFAPDKLHAHASYAMNVYYQIHGRNYWNCDFKGTGLVTFSDPSKNSRIFPSHFPTSEGVLVLVKTSFIKRVRSGWINP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	0	1
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	1.00	0.9485
AT2G25270			unknown protein		Potri.018G023200 [exp]	3.16	0.9232
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.015G059100 [exp]	3.46	0.9072
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	7.21	0.8990
AT4G05520		ATEHD2	EPS15 homology domain 2 (.1.2)		Potri.011G022300 [exp]	8.06	0.8754
AT3G20015			Eukaryotic aspartyl protease f...		Potri.005G063000 [exp]	8.60	0.8531
AT3G12110		ACT11	actin-11 (.1)		Potri.016G045500 [exp]	9.16	0.8937	ACT7,Pt-ACT2.3
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	14.66	0.8950	Pt-SAH7.1
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	16.24	0.8938
AT4G15790			unknown protein		Potri.008G207500 [exp]	16.73	0.8924

Compare expression of checked genes

Potri.002G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.