Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42350 719 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42360 719 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 63 / 2e-10 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G27420 62 / 2e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 62 / 6e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 61 / 2e-09 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G24540 57 / 2e-08 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 54 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 53 / 4e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 53 / 4e-07 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253500 [exp] 1056 / 0 AT5G42360 687 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 75 / 3e-14 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 57 / 2e-08 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 56 / 4e-08 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 56 / 5e-08 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G178500 [exp] 54 / 1e-07 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 54 / 2e-07 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 54 / 3e-07 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 53 / 3e-07 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013215 [exp] 795 / 0 AT5G42350 647 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030733 [exp] 486 / 2e-167 AT5G42360 388 / 1e-129 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 74 / 8e-14 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 73 / 2e-13 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 62 / 9e-10 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031955 [exp] 61 / 2e-09 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 56 / 6e-08 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007855 [exp] 55 / 1e-07 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013899 [exp] 53 / 6e-07 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 52 / 7e-07 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.002G007700.1 pacid=42778350 polypeptide=Potri.002G007700.1.p locus=Potri.002G007700 ID=Potri.002G007700.1.v4.1 annot-version=v4.1 ATGTTTTCTGAGAGATTAACTGGAGAGGCATCTCTTCGCCGGGAATTGGAGGCTCTGAGTGTGTCGCAACGGCTAGTGAGAAGTGTTAGCCAGAAGTTGA GGAAGAAGAATAATCTTAGAGGTGAAGGAGAGGAAGAGGATGATTCAAGGGGAGTTTCTCTGAAATGTCTTACTTTGTATGGTATGGGTGGGGGCTGCAA AGTTGGTGCTGACACAGGTGAAGAATTTGGGGATCCGAGTGGTAGGAGGAGGTCATGCAGTGCTAGTGAAGAAGGAAAGGGATATAAACCAATATGTGGG AATGAGGAGACAGGGTTCGATTGTTTCTCATATGGGGTGAGAGAGAAGTTCTGGAAGAAAAACAGTAGAAAGGATTTAGAGCTTGAAGATTCGATTCAAA ATAGCAGGTTGCATATGTTTCTTCCAGATGATGTACTGGAATTATGCTTAGTGAGACTCCCATTGACCAGTCTCATGAATGCCCGCCTTGTATGCAAGAA ATGGAGATACTTGACCACCACCCCTCGGTTCCTGCAGATGAGACGGGAAGGTGCATATCTGAAGCCGTGGTTGTTTCTGTTTGGTGCTGTTAAAGATGGA TATTGTTCCGGAGATATATATGCATTGGATGTTTCTCAGGACCAGTGGCATAGGATTGATTCCGACATTCTAAAAGGAAGGTTCATGTTTTCTGTTGCCA GTATTCAAGATGATATTTATGTTGTTGGAGGTTGTTCTAGCTTGACACACTTTGGTAGGGTGGATAGGAGCTCATTTCGGACACACAAAGGGGTGTGGGT TTTTAGCCCTTTAACAAAATCTTGGCGTAAAATTGCACACATGAGGTGTGCAAGATCAATGCCTGTTTTAGGAATTTCTGAGGTTCATTCGGACTTTACA GTGGTTCACAGTCATCAACATCGACAAGAACGACGTTTTCCTAGGTCACGTGTTGGTGGGGTATCGGATGTATATGAGGACCCACACAGGCTTTCACTGA GACGACAATATAGAAAGGCTTTTGATGAATATGAGCCTTCATTGTTACCCAATAGAAAGTCACACAGGTTCATCAGACAAAAAAATGATCAATCAAATAC AAAGTACTGTAAGAGGTTTGTATTGATTTCTGTAGGAGGTCTTGGATCCTGGGATGAGCCATTGGATTCTGGAGAAATTTATGATCCCGTATCAAATAAA TGGACAGAAATCCAGAGGTTGCCAATGGATTTTGGGGTGGTTTGTTCTGGAGTTATTTGTAATGGGATTTTTTATGTTTACTCCGAGGCAGACAAGCTCA TGGGATATGACATTCAAAGGGGCTTTTGGATGGCAATCCAAACCTCTCCATTCCCTCCTCGTGTTCACGAGTATTACCCTAAACTTGTATCTTGCAATGA CCAACTATTTATGCTTTCAGTCTCCTGGTGTGAAGGGGATGGTCAAATAGGCCAGAGAAACAAGGCTGTTAGAAAATTGTGGGAGCTAGATCTCATGTAT CTTACTTGGACAGAAGTTTCACTGCATCCCGATGCGCCAATGGATTGGAATGCTGCATTTGTTGCAGATAAAAACCTAATATTTGGGGTTGAAATGTTCA AAATATTTGGTCAAGTTTTGAACTTCTTGACTGTATGTGATGTGTCTGGCAGGGGGACAAACTGGAGCCACCTTGCTAGGAATCACATGACTCATGAATT GGACGCTTCCTCGTGCATGACTAAATCATTGGCTGTCTTACATCTCTGA
AA sequence Show only first row Show all	>Potri.002G007700.1 pacid=42778350 polypeptide=Potri.002G007700.1.p locus=Potri.002G007700 ID=Potri.002G007700.1.v4.1 annot-version=v4.1 MFSERLTGEASLRRELEALSVSQRLVRSVSQKLRKKNNLRGEGEEEDDSRGVSLKCLTLYGMGGGCKVGADTGEEFGDPSGRRRSCSASEEGKGYKPICG NEETGFDCFSYGVREKFWKKNSRKDLELEDSIQNSRLHMFLPDDVLELCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGAYLKPWLFLFGAVKDG YCSGDIYALDVSQDQWHRIDSDILKGRFMFSVASIQDDIYVVGGCSSLTHFGRVDRSSFRTHKGVWVFSPLTKSWRKIAHMRCARSMPVLGISEVHSDFT VVHSHQHRQERRFPRSRVGGVSDVYEDPHRLSLRRQYRKAFDEYEPSLLPNRKSHRFIRQKNDQSNTKYCKRFVLISVGGLGSWDEPLDSGEIYDPVSNK WTEIQRLPMDFGVVCSGVICNGIFYVYSEADKLMGYDIQRGFWMAIQTSPFPPRVHEYYPKLVSCNDQLFMLSVSWCEGDGQIGQRNKAVRKLWELDLMY LTWTEVSLHPDAPMDWNAAFVADKNLIFGVEMFKIFGQVLNFLTVCDVSGRGTNWSHLARNHMTHELDASSCMTKSLAVLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	0	1
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	3.16	0.9144	ATEB1.4
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	6.00	0.9121
AT1G48780			unknown protein		Potri.015G045700 [exp]	8.83	0.9023
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	10.00	0.8991
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	11.48	0.8794
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	12.72	0.8894
AT2G27740			Family of unknown function (DU...		Potri.009G147500 [exp]	13.07	0.8693
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	13.49	0.8755
AT5G39570			unknown protein		Potri.004G127400 [exp]	13.52	0.7963	LAP1.3
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	13.67	0.8794

Compare expression of checked genes

Potri.002G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.