Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 1028 / 0 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 1003 / 0 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 491 / 2e-159 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G71020 89 / 2e-18 ARM repeat superfamily protein (.1.2) AT5G42340 89 / 6e-18 PUB15 Plant U-Box 15 (.1) AT3G46510 85 / 9e-17 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 84 / 1e-16 PUB11 ARM repeat superfamily protein (.1) AT3G54850 75 / 1e-13 ATPUB14 plant U-box 14 (.1) AT3G52450 71 / 1e-12 PUB22 plant U-box 22 (.1) AT4G36550 71 / 2e-12 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253400 [exp] 1467 / 0 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.008G112900 [exp] 525 / 2e-172 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 515 / 8e-169 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 247 / 4e-69 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 234 / 9e-65 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 223 / 4e-61 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 180 / 1e-46 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G079200 [exp] 176 / 2e-45 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G024600 [exp] 159 / 5e-40 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013216 [exp] 1329 / 0 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 1050 / 0 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 478 / 2e-154 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10040659 [exp] 289 / 1e-83 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 286 / 8e-83 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 252 / 5e-71 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029113 [exp] 196 / 2e-52 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10039402 [exp] 173 / 3e-44 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 159 / 4e-40 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 153 / 3e-38 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.002G007800.3 pacid=42777633 polypeptide=Potri.002G007800.3.p locus=Potri.002G007800 ID=Potri.002G007800.3.v4.1 annot-version=v4.1 ATGGCCGAAAGCTGGGATGGAAGTTATGATCCTGGTAGCCAATCAGATGACAGTCATTACTTTGAAAGACTCCGTGTAGAGCCTATTTATGATGCATTTG TCTGCCCTTTAACAAAGCAGGTTATGCGTGATCCTGTCACCTTAGAAAATGGTCAAACTTTTGAACGTGAAGCAATAGAGAAGTGGTTCAAGGAATGCAA GGAGAGTGGAAGGAAGTTGGTTTGCCCCTTGACTCAAAAGGAGTTGAAAAGCACAGACCTCAACCCCAGCATAGCTTTGCGGAACACCATTGAAGAGTGG ACTGCTAGGAATGAAGCTGTTCAACTTGATATGGCATGCAGATCTCTAAACCTGGGCAGTCCAGAAAGTGATGTTATGCATTCTTTGAAGTATATTCAAT ACATGTGCCATAAGAGCCGATCGAATAAGCATGTTGTGCGCAATGCTGATTTAATACCTATGATCGTTGAAATGTTGAAGAGTACCAGTCGTAGAGTCCG GTGTATTGCTTTGGAAACCCTTCAAACTGTGGTCGAGGATGATGCTGATAATAAGGCAATACTGGCTGAGGGTGACACAGTGCGGACCATAGTTAAGTTT TTGTCTCATGAGCAATCCATAGAAAGGGAAGAAGCTGTCTCCTTGCTGCTTGAGCTCTCAAAATCCGAAGCCTTGTGCGAGAAGATTGGTTCAATCAATG GAGCAATTCTCATTTTGGTTGGAATGACAAGCAGCAAATCAGAAAATCTTTCAACTGTTGAGAAGGCTGATAAAACTCTGGAAAATCTGGAGAAGTGTGA GAACAATGTACGGCAGATGGCTGAAAATGGTAGACTGAAACCTCTTTTGAATCAAATCCTTGAAGGCCCACCAGAAACTAAACTGTCTATGGCTTCATAC CTGGGTGAGCTAGTCTTGAACAATGATGTGAAAGTCCATGTTGCTAGAGCTGTTGGTTCATCTCTGATCAATATAATGAGAAGTGGTAATGTACAGTCAA GAGAAGCTGCTTTGAAAGCTTTGAATCAAATTTCTTCTTATGAGGCAAGTGCCAAGGTTTTGATTGAGGCTGGAATTCTTCCTCCTCTTGTCAAAGACCT GTTTACTGTTGGCTCCAACCAGCTCCCAATGCGTCTCAAAGAGGTCTCAGCCACAATTCTCTCCAATGTTGTAAACTCCGGCAATGACTTTGATTTGATT CCTGTTGGACCTGACCATCAGACTCTTGTTTCAGAAGACATAGTGCAGAACCTACTCCATCTAATTAGCAACACTGGTCCAGCTATTGAATGCAAGCTTC TGCAGGTTCTTGTTGGACTGACTAGTTCTCCATCTACTGTTTTAAATGTTGTCGCTGCCATTAAAAGCTCAGGTGCTATTATCAGTTTGGTTCAGTTTAT TGAGGCCCCCCAGAGGGATTTGCGTGTAGCTTCCATAAAACTTCTCCAGAATGTCTCTCCACACATGGGGGAGGAATTAGCTGATGCTCTCCGTGGCACA GTTGGCCAGCTTGGAAGCCTTTTCAAGGTTGTAGCAGAAAACGTAGGAATCACAGAAGAGCAAGCAGCTGCAGTTGGCCTTTTAGCTGAGCTCCCAGAGA GGGATTTGGGTCTCACTAGGCAGATGCTAGATGAAAGCGCCTTTCCCCTAATCATCTCCATAGTGGTAAAGATCCGTCAGGGGGAGATTAGGGGTGCCCG CTTTATGACACCATTTTTAGAAGGACTAGTACGGGTTCTTGCAAGGGTTACTTTTGTGTTGGCTGAAGAGCCGGATGCCATTAATCTCTCCCGTGAGCAC AATCTTGCTGCTCTTTTCATTGAACTGCTTCAGTCGAATGGGCTTGACAATGTACAGATGGTCTCTGCAATGGCACTAGAGAACTTATCTCAAGAGTCAA AAAATTTAACAAGATTGCCTGAGTTACCGCCTCCTGCTTTCTGTGCCTCAATCTTTTCATGTCTTAGCAAACAGCCTGTCATAACTGGATTGTGCCGGCT CCACCGAGGAACATGTTCCCTAAAAGATTCATTCTGTCTTCTGGAAGGACAGGCTGTTGAGAAGCTGGTAGCTCTTTTAGACCACACGAATGAGAAAGTG GTTGAAGCAGCTCTTGCAGCAATTTCTACTTTGTTGGATGATGGGGTTGCCATTGAACAAGGGGTTGCAGTGTTGTGTGCGGCAGAGGGAATTAGACCTA TTCTTGACGTGTTACTGGAGAAACGAACTGAGAATCTGAGAAGGAGGGCAGTTTGGGCTGTTGAGAGACTTTTACGGACTGAAGACATAGCATATGAAGT TTCTGGAGATCCAAATGTGAGTACTGCACTTGTTGATGCTTTCCAGCATGCTGACTATCGAACACGGCAGATTGCTGAGCGTGCCCTGAAACATGTTGAT AAGATACCCAATTTCTCTGGTATCTTTCCAAATATGGGTTAG
AA sequence Show only first row Show all	>Potri.002G007800.3 pacid=42777633 polypeptide=Potri.002G007800.3.p locus=Potri.002G007800 ID=Potri.002G007800.3.v4.1 annot-version=v4.1 MAESWDGSYDPGSQSDDSHYFERLRVEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTQKELKSTDLNPSIALRNTIEEW TARNEAVQLDMACRSLNLGSPESDVMHSLKYIQYMCHKSRSNKHVVRNADLIPMIVEMLKSTSRRVRCIALETLQTVVEDDADNKAILAEGDTVRTIVKF LSHEQSIEREEAVSLLLELSKSEALCEKIGSINGAILILVGMTSSKSENLSTVEKADKTLENLEKCENNVRQMAENGRLKPLLNQILEGPPETKLSMASY LGELVLNNDVKVHVARAVGSSLINIMRSGNVQSREAALKALNQISSYEASAKVLIEAGILPPLVKDLFTVGSNQLPMRLKEVSATILSNVVNSGNDFDLI PVGPDHQTLVSEDIVQNLLHLISNTGPAIECKLLQVLVGLTSSPSTVLNVVAAIKSSGAIISLVQFIEAPQRDLRVASIKLLQNVSPHMGEELADALRGT VGQLGSLFKVVAENVGITEEQAAAVGLLAELPERDLGLTRQMLDESAFPLIISIVVKIRQGEIRGARFMTPFLEGLVRVLARVTFVLAEEPDAINLSREH NLAALFIELLQSNGLDNVQMVSAMALENLSQESKNLTRLPELPPPAFCASIFSCLSKQPVITGLCRLHRGTCSLKDSFCLLEGQAVEKLVALLDHTNEKV VEAALAAISTLLDDGVAIEQGVAVLCAAEGIRPILDVLLEKRTENLRRRAVWAVERLLRTEDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHVD KIPNFSGIFPNMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	0	1
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Potri.013G148500 [exp]	1.00	0.7748
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	2.00	0.6916
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	3.87	0.7074
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	8.06	0.6873
AT2G44140			Peptidase family C54 protein (...		Potri.007G147100 [exp]	8.36	0.7271
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	12.04	0.6137
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	17.49	0.6098
AT2G21120			Protein of unknown function (D...		Potri.004G168900 [exp]	19.49	0.6325
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.012G117800 [exp]	22.00	0.6275	ARA7.1
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	23.23	0.6465

Compare expression of checked genes

Potri.002G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.