Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 517 / 2e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 476 / 5e-152 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 396 / 5e-122 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 396 / 8e-122 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 389 / 8e-119 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 389 / 3e-118 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 383 / 5e-116 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 378 / 5e-115 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G49660 372 / 3e-114 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 370 / 4e-113 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008175 [exp] 1381 / 0 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008100 [exp] 1343 / 0 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 1184 / 0 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008450 [exp] 786 / 0 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 533 / 9e-175 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 519 / 4e-170 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.003G108200 [exp] 517 / 2e-169 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 514 / 6e-168 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 513 / 2e-167 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 493 / 5e-159 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 491 / 2e-158 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 489 / 1e-156 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 487 / 1e-156 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 476 / 2e-155 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 478 / 6e-154 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 469 / 3e-150 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 422 / 7e-132 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 422 / 1e-131 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 391 / 2e-121 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G007925.1 pacid=42777169 polypeptide=Potri.002G007925.1.p locus=Potri.002G007925 ID=Potri.002G007925.1.v4.1 annot-version=v4.1 ATGGCATCCATTGATTATGAGCCAAAACTTCTTGCAATTTTAAGCACCTCAATTTTCTTGTCCTGTATTTTTGTATCTAGTACTGGTCTTGTGGCTGCAC TTGATGACTCAGCCTTGCTAGCATCAGAAGGGAAGGCTTTGCTTGAGAGTGGATGGTGGAGTCACTACCGCAACCTCACCTCACATCGCTGCAAGTGGAC TGGCATAGTCTGTGATCGGGCTGGAAGCATCATTGACATTTCCCCACCTCCAGAGTTCGTCAAGGTGGGAAATAAGTTTGGAAAGATGAACTTTTCTTGC TTCTCAAACCTTGCCCGTCTCCACCTGGCCAACCATGAGCTCAGTGGGAGCATCCCGCCTCAAATTTCCATCCTTCCACAACTCACATACCTCAACCTGT CCTCAAATAATCTAGCAGGTGAGTTACCGTCTTCACTTGGAAATCTCAGCCGATTAGTTGAGCTTGATTTTTCTTCCAATAATTTCAGCAACTCCATCCC TCCAGAACTAGGCAATCTTAAAAATCTTGTTACTTTGAGCTTGTCATATAACAACTTCAGCGGCCCAATCCCTTCGGCACTTTGTCATTTGGAAAATCTA ACGCATTTACATATGGATCACAATAGTTTCGAAGGTGCCCTCCCTAGTGAAATAGGGAACATGAAAAATCTAGAGATTTTGGACGTGAGTAATAATACAC TTAATGGTCCAATCCCTCGAACAATGGGTAGTTTAGCCAAGTTGAGGTCTTTGATCTTTTTTAAGAACAAAATCAATGAATCCATCCCTTTAGAAATAGG AAATTTGACGAACCTTGAAGATTTAGATCTTTGCTCTAATAACCTAGTTGGTTCAATTCCTTCAACTATGAGTCTTTTAGCCAACTTGATTTCTCTATTT CTTTGTGAGAACCAAATCGAAGGATCCATCCCTTTGGAAATAGGAAATTTGATGAATCTACAATATTTAGACCTTTCCTCTAATATCCTAGGTGGTTCAA TTCCTTTAACTTCGGGCCTTTTATCCAATTTGATTTTTGTAGATCTTTCCTATAATATTCTAGTTGGTTCAATTCCTTCAACTTTAGGCCTTTTATCCAA TTTGATTCTTCTAGATCTTTCCTACAACCAAATCAATGGATCTATCCCAATCAAGATAGGAAATTTGAGAAATTTGACAGATTTATATCTGAATTCAAAC AATATCAGTGGTTTAATTCCTTCTATAATGGGCCGTTATAGAGAACCAAACCTTTTTGAAAACCAAAACGATGGATCCATCCCTTCATCTTTGAAGTATT GTAATAATTTGACCTTCCTAGATTTGAGCTGCAATAATTTAAGTGAAGAGATACCCTCCAATCTATATGATTTGACCTCTTTACAATATGTGAATTTTAG TTACAATAATCTCTCAGGCCTTGTTCCCTTGAATTTGCGACCACCCTTTGATTTTAATTTCACATGTGATTTACTTCTTCATGGGCAAATCACCAACTAT TCCGCAACTTTTAAAGCTACTGCATTTGAGGGCAACAAAGATTTACACCCTGATTTCTCAAACTGTTCGTTACCTTCAAAAACTAACAGAAGGATTCATT CCATCAAGATATTTCTTCCTATCACCACCATTTCACTGTGTCTCTTGTGTCTCGGATGTTGTTATCTGTCTCGATGCGAGGCTACCCAACCTGAGCCAAC ATCATCAAAGAATGGAGGCTTGTTTTCCATATGGAATTATGATGGGAGGATTGCATACGAAGACATCATTACAGCGACCGAGAACTTTGACCTCAGATAT TGTATTGGATCCGGTGGTTATGGGAGCGTCTACCGAGCACAACTTCCAAGTGGGAAATTAGTTGCATTGAAGAAACTTCATCATCGAGAGGCAGAGGAGC CGGCTTTTGACAAGAGTTTCAAAAATGAAGTGAAACTGCTCACACAAATACGTCACAGGAGCATTGTAAAACTTTATGGATTCTGTTTACACCAGCGCTG CATGTTTCTTGTTTACGAGTACATGGAAAAGGGAAGCTTGTTTTGTGCCTTGAGAAATGATGTTGAAGCTGTGGAATTGAAATGGATGAAAAGAGCACAC ATCATCAAAGACATTGCTCACGCATTATCTTACTTGCATCATGATTGCAACCCACCAATTGTTCATCGAGACATATCAAGCAGCAATGTTCTGTTGAATT CAGAATCCAAGTCTTTTGTTGCTGATTTTGGTGTGGCTAGACTTCTCGATCCTGATTCATCCAACCATACTGTACTTGCTGGTACCTATGGATACATTGC CCCAGAGTTGGCTTATACTATGGTGGTGACAGAGAAATGTGATGTCTATAGCTTTGGAGTAGTGGCGCTTGAAACTTTGATGGGAAAGCATCCGGGAGAT ATCCTATCATCATCTGCTCGGGCTATGACACTGAAAGAAGTGTTAGATCCTCGTTTGCCACCTCCAACAAATGAAATTGTCATACAGAATATATGTATTA TTGCAAGTCTGGCATTTTCTTGCTTGCATTCAAATCCAAAATATCGACCTTCAATGAAATTCGTGTCTCAAGAATTTCTATCTCCCAAGAGATTATTGGG AGGTCTCGAGATTTCTTTGTTGGAGCTCCGAAATCTTGGCATGCACACAAATGTAGGTGAGATCACAGTTCCTCGCTGA
AA sequence Show only first row Show all	>Potri.002G007925.1 pacid=42777169 polypeptide=Potri.002G007925.1.p locus=Potri.002G007925 ID=Potri.002G007925.1.v4.1 annot-version=v4.1 MASIDYEPKLLAILSTSIFLSCIFVSSTGLVAALDDSALLASEGKALLESGWWSHYRNLTSHRCKWTGIVCDRAGSIIDISPPPEFVKVGNKFGKMNFSC FSNLARLHLANHELSGSIPPQISILPQLTYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNFSNSIPPELGNLKNLVTLSLSYNNFSGPIPSALCHLENL THLHMDHNSFEGALPSEIGNMKNLEILDVSNNTLNGPIPRTMGSLAKLRSLIFFKNKINESIPLEIGNLTNLEDLDLCSNNLVGSIPSTMSLLANLISLF LCENQIEGSIPLEIGNLMNLQYLDLSSNILGGSIPLTSGLLSNLIFVDLSYNILVGSIPSTLGLLSNLILLDLSYNQINGSIPIKIGNLRNLTDLYLNSN NISGLIPSIMGRYREPNLFENQNDGSIPSSLKYCNNLTFLDLSCNNLSEEIPSNLYDLTSLQYVNFSYNNLSGLVPLNLRPPFDFNFTCDLLLHGQITNY SATFKATAFEGNKDLHPDFSNCSLPSKTNRRIHSIKIFLPITTISLCLLCLGCCYLSRCEATQPEPTSSKNGGLFSIWNYDGRIAYEDIITATENFDLRY CIGSGGYGSVYRAQLPSGKLVALKKLHHREAEEPAFDKSFKNEVKLLTQIRHRSIVKLYGFCLHQRCMFLVYEYMEKGSLFCALRNDVEAVELKWMKRAH IIKDIAHALSYLHHDCNPPIVHRDISSSNVLLNSESKSFVADFGVARLLDPDSSNHTVLAGTYGYIAPELAYTMVVTEKCDVYSFGVVALETLMGKHPGD ILSSSARAMTLKEVLDPRLPPPTNEIVIQNICIIASLAFSCLHSNPKYRPSMKFVSQEFLSPKRLLGGLEISLLELRNLGMHTNVGEITVPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G007925 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008450 [exp]	2.44	0.9323
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	2.44	0.8630
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008375 [exp]	3.00	0.9248
AT5G28830			calcium-binding EF hand family...		Potri.013G040500 [exp]	10.19	0.7331
AT2G35910			RING/U-box superfamily protein...		Potri.008G018900 [exp]	28.24	0.7610
					Potri.007G060500 [exp]	31.06	0.8814
AT4G16260			Glycosyl hydrolase superfamily...		Potri.009G050300 [exp]	35.49	0.8369
AT3G52220			unknown protein		Potri.010G240300 [exp]	37.46	0.7116
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.019G018900 [exp]	51.26	0.7976
					Potri.001G131500 [exp]	58.73	0.7055

Compare expression of checked genes

Potri.002G007925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.