Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 566 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 540 / 2e-175 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 466 / 2e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 447 / 3e-140 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 441 / 8e-138 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 439 / 9e-137 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 430 / 2e-132 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G49660 421 / 1e-131 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 419 / 7e-131 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 416 / 7e-129 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008175 [exp] 1786 / 0 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 1390 / 0 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G007925 [exp] 1004 / 0 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008450 [exp] 779 / 0 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 576 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 573 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.003G108200 [exp] 569 / 0 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 565 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 563 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 555 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 543 / 1e-177 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 535 / 2e-174 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 521 / 3e-169 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 522 / 7e-169 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10003612 [exp] 514 / 7e-165 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 504 / 5e-162 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 492 / 6e-161 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 496 / 4e-160 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 454 / 1e-144 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.002G008100.1 pacid=42778583 polypeptide=Potri.002G008100.1.p locus=Potri.002G008100 ID=Potri.002G008100.1.v4.1 annot-version=v4.1 ATGGCATCCATTGATTATGAGCCAAAACTTCTTGCAATTTTAAGCACCTCAATTTTCTTGTCCAGTATTTTTGTATCTAGTACTGGTCTTGTGGCTGCAC TTGATGACTCGGCCTTGCTAGCATCAGAACGCAAGGCTTTGGTTGAGAGTGGATGGTGGAGTGACTACAGCAACCTCACCTCACATCGTTGCAACTGGAC TGGCATAGTTTGTGATGGGGCTGGAAGCATCACTAAGATTTCCCCACCTCCAGAGTTCCTCAAGGTGGGAAATAAGTTTGGAAAGATGAACTTTTCTTGC TTCTCAAACCTTGTCCGTCTCCACCTGGCCAACCATGAGCTCAGTGGGAGCATCCCGCCTCAAATTTCTATCCTTCCACAACTCAGATACCTCAACCTGT CCTCAAATAATCTAGCAGGTGAGTTACCGTCTTCACTTGGAAATCTCAGCCGATTAGTTGAGCTTGATTTTTCTTCCAATAATTTAACCAATTCCATCCC TCCAGAACTAGGCAATCTTAAAAATCTTGTTACTTTGAGCTTGTCTGATAACATCTTCAGCGGCCCAATCCCTTCGGCACTTTGTCATTTGGAAAATCTG AGGCATTTATTTATGGATCATAATAGTCTCGAAGGTGCCCTCCCTAGAGAAATAGGGAACATGAAAAATCTAGAGATTTTGGACGTGAGTTATAATACAC TTAATGGTCCAATCCCTCGAACAATGGGTAGTTTAGCCAAGTTGAGGTCTTTGATCCTTTCTCGCAACGCAATCGATGGATCCATTCCTTTGGAAATAGG AAATTTGACGAACCTTGAAGATTTAAATCTTTGCTCTAATATCCTAGTTGGTTCAATTCCTTCAACGATGGGTGTTTTACCCAACTTGATTTCTCTATTT CTTTGTGAGAACCATATCCATGGATCCATTCCTTTGAAAATAGGAAATTTGACGAATCTAGAATATTTAGTTCTTGGCTCTAATATTCTAGTTGGTTCAA TTCCTTCAACGCTGGGTCTTTTATCCAATTTGATTTTTGTAGATCTTTCAGTCAACCAAATCAATGGACCCATCCCATTAAAAATAGGAAATTTGACGAA ACTACAATATTTAAATCTTGATGACAACAAGATCACTGGTTTGATTCCTTTTTCATTAGGCAATTTAAGAAACTTGACAACTCTATATCTCTCTCACAAC CAAATCAACGGATCCATCCCTTTAGAAATACAGAACTTGACAAAGTTGGAAGAATTATATCTGTATTCAAACAATATCAGTGGCTCGATTCCTACTACAA TGGGCCGTTTAACCAGTTTGAGATTTCTATCCCTCTATGACAACCAAATCAACGGATCCATCCCTTTGGAAATACAGAACTTGACAAAGTTGGAAGAATT ATATCTGTATTCAAACAATATCAGTGGCTCGATTCCTACTATAATGGGCAGTTTAAGAAAACTAAACCTTTCTCGAAACCAAATGAATGGACCCATCTCT TCATCTTTGAACAATTGTAATAATTTGACCTTGCTAGATTTGAGCGGCAATAATTTAAGTGAAGAGATACCCTACAATCTATATAATTTGACCTCTTTAC AAAAAGCGAATTTTAGTTACAATAATCTCTCAGGCCCTGTTCCCTTGAATTTGCAACCACCCTTTGATTTTTATTTCACATGTGATTTACTTCTTCATGG GCATATTACCAACGATTCTGCAACTTTTAAAGCTACTGCATTTGAGGGCAACAGATATTTACACCCTGATTTCTCAAACTGTTCGTTACCTTCAAAAACC AACAGAATGATTCATTCCATCAAGATATTACTTCCTATCACTGCCATTTCACTTTGTCTCTTGTGTCTCGGATGTTTTTATCTATCTCGATGCAAGGCTA CCCAACCTGAGCCAACATCATTAAAGAATGGAGACTTGTTTTCCATATGGAATTATGATGGGAGGATTGCATACGAAGACATCATTGCAGCGACCGAGAA CTTTGACCTCAGATATTGTATCGGAACCGGTGGTTATGGGAATGTCTACCGAGCACAACTTCCAAGTGGGAAATTAGTTGCCTTGAAGAAACTTCATCGT CGAGAGGCAGAGGAGCCGGCTTTTGACAAGAGTTTAAAAAATGAGGTGGAACTGCTCACACAAATACGTCACAGGAGCATTGTAAAGCTTTATGGATTCT GTTTACACCAGCGCTGCATGTTTCTTGTTTACGAGTACATGGAAAAGGGAAGCTTGTTTTGTGCCTTGAGAAATGATGTTGGAGCCGTGGAACTGAAGTG GATGAAAAGAGCACACATCATCAAAGACATTGCTCACGCATTATCTTACTTGCATCATGATTGCAACCCACCAATTGTTCATCGAGACATATCAAGCAGC AATGTTCTGTTGAATTCAGTATCCAAGTCTTTTGTTGCTGATTTTGGCGTGGCTAGACTTCTCGATCCAGATTCGTCCAACCATACTGTACTTGCTGGTA CCTATGGATACATTGCCCCAGAGCTGGCTTATACTATGGTGGTGACAGAGAAATGTGATGTCTATAGCTTTGGAGCAGTGGCGCTAGAAACGTTGATGGG AAGGCATCCAGGAGATATCCTATCATCATCTGCTCGGGCTATTACACTGAAAGAAGTGTTAGATCCTCGTTTGTCACCTCCGACAGATGAAATTGTCATA CAGAATATATGTATTATTGCAACTCTGGCATTCTCTTGCTTACATTCGAATCCAAAATCTCGACCTTCAATGAAATTCGTGTCTCAAGAATTTCTATCTC CCAAGAGATCACTGGCAGGTCTTGAGATTTCTTTGCTGGAGCTGCGAACTCTTGGCATGCACGCAAATGGAGGTGATATCACAGTTCCTAGTTGA
AA sequence Show only first row Show all	>Potri.002G008100.1 pacid=42778583 polypeptide=Potri.002G008100.1.p locus=Potri.002G008100 ID=Potri.002G008100.1.v4.1 annot-version=v4.1 MASIDYEPKLLAILSTSIFLSSIFVSSTGLVAALDDSALLASERKALVESGWWSDYSNLTSHRCNWTGIVCDGAGSITKISPPPEFLKVGNKFGKMNFSC FSNLVRLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDNIFSGPIPSALCHLENL RHLFMDHNSLEGALPREIGNMKNLEILDVSYNTLNGPIPRTMGSLAKLRSLILSRNAIDGSIPLEIGNLTNLEDLNLCSNILVGSIPSTMGVLPNLISLF LCENHIHGSIPLKIGNLTNLEYLVLGSNILVGSIPSTLGLLSNLIFVDLSVNQINGPIPLKIGNLTKLQYLNLDDNKITGLIPFSLGNLRNLTTLYLSHN QINGSIPLEIQNLTKLEELYLYSNNISGSIPTTMGRLTSLRFLSLYDNQINGSIPLEIQNLTKLEELYLYSNNISGSIPTIMGSLRKLNLSRNQMNGPIS SSLNNCNNLTLLDLSGNNLSEEIPYNLYNLTSLQKANFSYNNLSGPVPLNLQPPFDFYFTCDLLLHGHITNDSATFKATAFEGNRYLHPDFSNCSLPSKT NRMIHSIKILLPITAISLCLLCLGCFYLSRCKATQPEPTSLKNGDLFSIWNYDGRIAYEDIIAATENFDLRYCIGTGGYGNVYRAQLPSGKLVALKKLHR REAEEPAFDKSLKNEVELLTQIRHRSIVKLYGFCLHQRCMFLVYEYMEKGSLFCALRNDVGAVELKWMKRAHIIKDIAHALSYLHHDCNPPIVHRDISSS NVLLNSVSKSFVADFGVARLLDPDSSNHTVLAGTYGYIAPELAYTMVVTEKCDVYSFGAVALETLMGRHPGDILSSSARAITLKEVLDPRLSPPTDEIVI QNICIIATLAFSCLHSNPKSRPSMKFVSQEFLSPKRSLAGLEISLLELRTLGMHANGGDITVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008100 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008175 [exp]	1.00	0.9944
AT5G05340			Peroxidase superfamily protein...		Potri.013G156400 [exp]	4.58	0.9531
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G007900 [exp]	6.32	0.9528
					Potri.017G111000 [exp]	8.06	0.9514
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G025400 [exp]	16.70	0.9374
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	18.49	0.9417
					Potri.001G131600 [exp]	21.16	0.9397
					Potri.017G111150 [exp]	22.91	0.9413
AT1G02260			Divalent ion symporter (.1)		Potri.017G141800 [exp]	25.45	0.9218
AT4G27680			P-loop containing nucleoside t...		Potri.011G055212 [exp]	25.45	0.9156

Compare expression of checked genes

Potri.002G008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.