Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 566 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 543 / 1e-176 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 467 / 1e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 461 / 1e-145 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 452 / 1e-141 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 437 / 2e-135 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 431 / 3e-135 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 426 / 1e-133 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 420 / 4e-131 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28650 420 / 4e-131 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008100 [exp] 1786 / 0 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 1417 / 0 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G007925 [exp] 1324 / 0 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008450 [exp] 797 / 0 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 583 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 575 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 570 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.003G108200 [exp] 570 / 0 AT4G08850 678 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 568 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 570 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 555 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 539 / 7e-176 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 528 / 3e-170 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10002293 [exp] 524 / 1e-169 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019035 [exp] 519 / 3e-168 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 512 / 5e-165 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 505 / 8e-164 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 489 / 8e-160 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 450 / 8e-143 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.002G008175.1 pacid=42777446 polypeptide=Potri.002G008175.1.p locus=Potri.002G008175 ID=Potri.002G008175.1.v4.1 annot-version=v4.1 ATGGCATCCATTGATTATGAGCCAAAACTTCTTGCAATTTTAAGCACCTCAATTTTCTTGTCCAGTATTTTTGTATCTAGTACTGGTCTTGTGGCTGCAC TTGATGACTCGGCCTTGCTAGCATCAGAAGGCAAGGCTTTGGTTGAGAGTGGATGGTGGAGTGACTACAGCAACCTCACCTCACATCGTTGCAACTGGAC TGGCATAGTTTGTGATGGGGCTGGAAGCATCACTAAGATTTCCCCACCTCCAGAGTTCCTCAAGGTGGGAAATAAGTTTGGAAAGATGAACTTTTCTTGC TTCTCAAACCTTGTCCGTCTCCACCTGGCCAACCATGAGCTCAGTGGGAGCATCCCGCCTCAAATTTCTATCCTTCCACAACTCAGATACCTCAACCTGT CCTCAAATAATCTAGCAGGTGAGTTACCGTCTTCACTTGGAAATCTCAGCCGATTAGTTGAGCTTGATTTTTCTTCCAATAATTTAACCAATTCCATCCC TCCAGAACTAGGCAATCTTAAAAATCTTGTTACTTTGAGCTTGTCTGATAACATCTTCAGCGGCCCAATCCCTTCGGCACTTTGTCATTTGGAAAATCTA AGGCATTTATTTATGGATCATAATAGTCTCGAAGGTGCCCTCCCTAGAGAAATAGGGAACATGAAAAATCTAGAGATTTTGGACGTGAGTTATAATACAC TTAATGGTCCAATCCCTCGAACAATGGGTAGTTTAGCCAAGTTGAGGTCTTTGGTCCTTTCTCGCAACGCAATCAATGGATCCATTCCTTTGGAAATAGG AAATTTGACGAACCTTGAAGATTTAAATCTTTGCTCTAATATCCTAGTTGGTTCAATTCCTTCAACGATGGGTCTTTTACCCAACTTGATTTCTCTATTT CTTTGTGAGAACCATATCCAAGGATCCATTCCTTTGAAAATAGGAAATTTGACGAATCTAGAATATTTAGTTCTTGGCTCTAATATCCTAGGTGGTTCAA TTCCTTCAACTTCGGGCTTTTTATCCAATTTGATTTTTGTAGATATTTCCAGTAACCAAATCAATGGACCCATCCCCTTAGAAATAGGAAATTTGACGAA TCTACAATATTTAAATCTTGATGGCAACAAGATCACTGGTTTGATTCCTTTTTCATTAGGCAATTTAAGAAACTTGACAACTCTATATCTCTCTCACAAC CAAATCAACGGATCCATCCCTTTAGAAATACAGAACTTGACAAAGTTGGAAGAATTATATCTGTATTCAAACAATATCAGTGGTTCGATTCCTACTACAA TGGGCCGTTTAACCAGTTTGAGATTTCTATCCCTCTATGACAACCAAATCAACGGATCCATCCCTTTGGAAATACAGAACTTGACAAAGTTGGAAGAATT ATATCTGTATTCAAACAATATCAGTGGCTCGATTCCTACTATAATGGGCAGTTTAAGAAAACTAAACCTTTCTCGAAACCAAATGAATGGACCCATCTCT TCATCTTTGAAGAATTGTAATAATTTGACCTTGCTAGATTTGAGCTGCAATAATTTAAGTGAAGAGATACCCTACAATCTATATAATTTGACCTCTTTAC AAAAAGCGAATTTTAGTTACAATAATCTCTCAGGCCCTGTTCCCTTGAATTTGAAACCACCCTTTGATTTTTATTTCACATGTGATTTACTTCTTCATGG GCATATTACCAACGATTCTGCAACTTTTAAAGCTACTGCATTTGAGGGCAACAGATATTTACACCCTGATTTCTCAAACTGTTCGTTACCTTCAAAAACC AACAGAATGATTCATTCCATCAAGATATTTCTTCCTATCACTGCCATTTCACTTTGTCTCTTGTGTCTCGGATGTTGTTATCTGTCTCGATGCAAGGCTA CCCAACCTGAGCCAACATCATTAAAGAATGGAGACTTGTTTTCCATATGGAATTATGATGGGAGGATTGCATACGAAGACATCATTGCAGCGACCGAGAA CTTTGACCTCAGATATTGTATCGGAACCGGTGGTTATGGGAATGTCTACCGAGCACAACTTCCAAGTGGGAAATTAGTTGCCTTGAAGAAACTTCATCGT CGAGAGGCAGAGGAGCCGGCTTTTGACAAGAGTTTAAAAAATGAGGTGGAACTGCTCACACAAATACGTCACAGGAGCATTGTAAAGCTTTATGGATTCT GTTTACACCAGCGCTGCATGTTTCTTGTTTACGAGTACATGGAAAAGGGAAGCTTGTTTTGTGCCTTGAGAAATGATGTTGGAGCCGTGGAACTGAAGTG GATGAAAAGAGCACACATCATCAAAGACATTGCTCACGCATTATCTTACTTGCATCATGATTGCAACCCACCAATTGTTCATCGAGACATATCAAGCAGC AATGTTCTGTTGAATTCAGTATCCAAGTCTTTTGTTGCTGATTTTGGCGTGGCTAGACTTCTCGATCCAGATTCGTCCAACCATACTGTACTTGCTGGTA CCTATGGATACATTGCCCCAGAGCTGGCTTATACTATGGTGGTGACAGAGAAATGTGATGTCTATAGCTTTGGAGCAGTGGCGCTAGAAACGTTGATGGG AAGGCATCCAGGAGATATCCTATCATCATCTGCTCGGGCTATTACACTGAAAGAAGTGTTAGATCCTCGTTTGTCACCTCCGACAGATGAAATTGTCATA CAGAATATATGTATTATTGCAACTCTGGCATTCTCTTGCTTACATTCGAATCCAAAATCTCGACCTTCAATGAAATTCGTGTCTCAAGAATTTCTATCTC CCAAGAGATCACTGGCAGGTCTTGAGATTTCTTTGCTGGAGCTGCGAACTCTTGGCATGCACGCAAATGGAGGTGATATCACAGTTCCTAGTTGA
AA sequence Show only first row Show all	>Potri.002G008175.1 pacid=42777446 polypeptide=Potri.002G008175.1.p locus=Potri.002G008175 ID=Potri.002G008175.1.v4.1 annot-version=v4.1 MASIDYEPKLLAILSTSIFLSSIFVSSTGLVAALDDSALLASEGKALVESGWWSDYSNLTSHRCNWTGIVCDGAGSITKISPPPEFLKVGNKFGKMNFSC FSNLVRLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNLTNSIPPELGNLKNLVTLSLSDNIFSGPIPSALCHLENL RHLFMDHNSLEGALPREIGNMKNLEILDVSYNTLNGPIPRTMGSLAKLRSLVLSRNAINGSIPLEIGNLTNLEDLNLCSNILVGSIPSTMGLLPNLISLF LCENHIQGSIPLKIGNLTNLEYLVLGSNILGGSIPSTSGFLSNLIFVDISSNQINGPIPLEIGNLTNLQYLNLDGNKITGLIPFSLGNLRNLTTLYLSHN QINGSIPLEIQNLTKLEELYLYSNNISGSIPTTMGRLTSLRFLSLYDNQINGSIPLEIQNLTKLEELYLYSNNISGSIPTIMGSLRKLNLSRNQMNGPIS SSLKNCNNLTLLDLSCNNLSEEIPYNLYNLTSLQKANFSYNNLSGPVPLNLKPPFDFYFTCDLLLHGHITNDSATFKATAFEGNRYLHPDFSNCSLPSKT NRMIHSIKIFLPITAISLCLLCLGCCYLSRCKATQPEPTSLKNGDLFSIWNYDGRIAYEDIIAATENFDLRYCIGTGGYGNVYRAQLPSGKLVALKKLHR REAEEPAFDKSLKNEVELLTQIRHRSIVKLYGFCLHQRCMFLVYEYMEKGSLFCALRNDVGAVELKWMKRAHIIKDIAHALSYLHHDCNPPIVHRDISSS NVLLNSVSKSFVADFGVARLLDPDSSNHTVLAGTYGYIAPELAYTMVVTEKCDVYSFGAVALETLMGRHPGDILSSSARAITLKEVLDPRLSPPTDEIVI QNICIIATLAFSCLHSNPKSRPSMKFVSQEFLSPKRSLAGLEISLLELRTLGMHANGGDITVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008175 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008100 [exp]	1.00	0.9944
AT5G05340			Peroxidase superfamily protein...		Potri.013G156400 [exp]	2.82	0.9672
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G007900 [exp]	3.46	0.9679
					Potri.017G111000 [exp]	3.46	0.9687
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	8.83	0.9622
AT4G27680			P-loop containing nucleoside t...		Potri.011G055212 [exp]	9.16	0.9368
					Potri.001G131600 [exp]	9.89	0.9594
					Potri.017G111150 [exp]	10.72	0.9650
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G025400 [exp]	12.24	0.9543
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	12.64	0.9586

Compare expression of checked genes

Potri.002G008175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.