Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 556 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 536 / 8e-173 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 444 / 4e-138 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 427 / 8e-132 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 427 / 7e-131 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 417 / 5e-128 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 416 / 7e-128 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 402 / 2e-121 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 398 / 4e-121 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28650 387 / 6e-118 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008175 [exp] 1165 / 0 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008100 [exp] 1136 / 0 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G007925 [exp] 964 / 0 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008450 [exp] 699 / 0 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 562 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 558 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 554 / 2e-180 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 556 / 1e-179 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G060400 [exp] 548 / 2e-178 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 573 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 565 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 520 / 2e-167 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 503 / 3e-161 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 506 / 5e-161 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10002293 [exp] 486 / 3e-154 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 483 / 7e-153 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 454 / 2e-145 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 421 / 1e-130 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 407 / 1e-124 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G008375.1 pacid=42776774 polypeptide=Potri.002G008375.1.p locus=Potri.002G008375 ID=Potri.002G008375.1.v4.1 annot-version=v4.1 ATGGCGTCCATTGATTATGAGCCAAAACTTCTTGCAGTTTTAAGCATCTCATTTTTCTTGTCCTGTATTTTTGTATCTAGTACTGGTCTTGTGGCTGCAC TTGATGACTCAGCCTTGCTAGCATCAGAAGGCAAGGCTTTGCTTGAGAGTGGATGGTGGAGTGACTACAGCAACCTCACCTCACATCGTTGCAAGTGGAC TGGCATAGTCTGTGATCGGGCTGGAAGCATCACTGAGATTTCCCCACCTCCAGAGTTCCTCAAGGTGGGAAATAAGTTTGGAAAGATGAACTTTTCTTGC TTCTCAAACCTTGTCCGTCTCCACCTGGCCAACCATGAGCTCAGTGGGAGCATCCCGCATCAAATTTCTATCCTCCCACAACTCAGATACCTCAACCTGT CCTCAAATTATCTAGCAGGTGAGTTACCGTCTTCACTTGGAAATCTCAGCCGATTAGTTGAGCTTGATTTTTCTTCCAATAATTTCATCAATTCCATCCC TCCAGAACTAGGCAATCTTAAAAGTCTTGTTACTTTGAGCTTGTCTTATAACAGCTTCAGCGGCCCAATCCACTCGGCACTTTGTCATTTGGACAATCTA ACGCATTTATTTATGGATCATAATAGACTCGAAGGTGCCCTCCCTAGAGAAATAGGGAACATGAGAAATCTAGAGATTTTGGACGTGAGTTATAATACAC TTAATGGTCCAATCCCTCGGACATTGGGTAGGTTAGCCAAGTTGAGGTCTTTGATCTTTCATGTGAACAAAATCAATGGATCCATACCTTTCGAAATAAG AAATTTGACGAACCTTGAATATTTAGATCTTTCCTCTAATATCCTAGGTGGTTCAATTCCTTCAACTCTGGGCCTTTTATCCAATTTGAATTTTGTAGAT CTTTTGGGCAACCAAATCAATGGACCTATCCCTTTAAAAATAGGAAATTTGACGAATCTACAATATTTACATCTCGGTGGCAACAAGATCACTGGTTTCA TTCCTTTTTCATTAGGCAATTTAAAAAGCTTGACAATGCTAGACCTCTCTCACAACCAAATTAATGGATCCATCCCTTTAGAAATACAGAACTTGACAAA TTTGAAAGAATTATATTTGAGTTCAAACAGTATCAGTGGTTCGATTCCTTCAACGTTGGGCCTTTTATCCAATTTGATTTCTCTAGATCTTTCCGACAAC CAAATCACCGGTTTGATTCCTTTTTTGTTAGGCAATTTAACAAGCTTGATAATACTAGACCTCTCTCACAACCAAATCAACGGATCCACCCCTTTAGAAA CACAAAACTTGACAAATTTGAAAGAATTATATTTGAGTTCAAACAGTATCAGTGGTTCGATTCCTTCAACTTTGGGCCTTTTATCGAATTTGACTTTTCT AGATCTTTCCAACAACCAAATCACCGGTTTGATTCCTTTTTTGTTAGACAATTTAACAAGCTTGATAATACTAGACCTCTCTCACAACCAAATCAACGGA TCCATCCCTTTGAAAATACAGAACTTGACAAATTTGGAAGAATTATATTTGAGTTCAAACAGTACCAGTGGTTCGATTCCTTCAACTTTGAGCCTTTTAT CCAATTTGATTCTTCTAGATCTTTCCTACAACCAAATTACCGGTTTGATTCCTTTTTTGTTAGGCAATTTAACAAACTTGACAACTCTATACCTTTCTCA CAACCAAATCAACGGATCCATCCCTTCATCTTTGAAGTATTGTAATAATTTGGCCTACCTAGATTTGAGCTTCAATAATTTAAGTGAAGAGATACCCTCC GAACTATATGATTTGGACTCTTTACAATATGTGAATTTTAGTTACAATAATCTCTCAGGCTCTGTTTCCTTGCCTTTGCCACCGCCCTTTAATTTTCATT TCACATGTGATTTTGTTCATGGGCAAATTAACAATGATTCTGCAACTTTAAAAGCTACTGCATTTGAGGGCAACAAAGATTTACACCCTGATTTCTCACG TTGTCCATCTATTTACCCCCCACCTTCAAAAACCTACTTGTTGCCTTCAAAAGACTCCAGAATAATTCATTCCATCAAAATATTTCTTCCTATCACCACC ATTTCACTTTGTCTCTTGTGTCTCGGATGTTATCTGTCTCGATGCAAGGCTACCGAACCTGAGACAACATCATCAAAGAATGGAGACTTGTTTTCCATAT GGAATTATGATGGGAGGATTGCATACGAAGACATCATTGCAGCGACGGAGAACTTTGACCTTAGATATTGTATCGGAACCGGTGGTTATGGGAGCGTCTA CCGAGCGCAACTTCCAAGTGGGAAATTAGTTGCCTTGAAGAAACTTCATCGTCGAGAGGCAGAGGAGCCGGCTTTTGACAAGAGTTTCAAAAATGAGGTG GAACTGCTCACACAAATACGTCACAGGAGCATTGTAAAGCTTTATGGATTCTGTTTGCACCAGCGCTGCATGTTTCTTGTTTACGAGTACATGGAAAAGG GAAGCTTGTTTTGTGCCTTGAGAAATGATGTTGGAGCTGTGGAATTGAAGTGGATGAAAAGAGCACACATCATCGAAGACATTGCTCACGCATTATCTTA CTTGCATCATGAGTGCAACCCACCAATTGTTCATCGAGACATATCAAGCAGCAATGTTCTGTTGAATTCAGAATCCAAGTCTTTTGTTGCTGATTTTGGT GTGGCTAGACTTCTAGATCCGGATTCGTCCAACCATACTGTACTTGCTGGTACCTATGGATACATTGCCCCAGAGTTGGCTTATACTATGGTGGTGACAG AGAAATGTGATGTGTACAGCTTCGGAGTTGTGGCGCTTGAAACTTTGATGGGAAGGCATCCGGGAGATATCCTATCATCATCTGCTCAGGCTATTACACT GAAAGAAGTGTTAGATCCTCGTTTGCCACCTCCAACAAATGAGATTGTCATACAGAATATATGTACCATTGCAAGTCTGATATTTTCTTGCTTACATTCA AATCCAAAAAATCGACCTTCAATGAAATTCGTGTCTCAAGAATTTCTATCTCCCAAGAGATTATTGGGAGGTCTCGAGATTTCTTTGTTGGAGCTGCGAA ATCTTGACATGCACACAAATGTTGGTGAGATCACAGTTCCTCGCTGA
AA sequence Show only first row Show all	>Potri.002G008375.1 pacid=42776774 polypeptide=Potri.002G008375.1.p locus=Potri.002G008375 ID=Potri.002G008375.1.v4.1 annot-version=v4.1 MASIDYEPKLLAVLSISFFLSCIFVSSTGLVAALDDSALLASEGKALLESGWWSDYSNLTSHRCKWTGIVCDRAGSITEISPPPEFLKVGNKFGKMNFSC FSNLVRLHLANHELSGSIPHQISILPQLRYLNLSSNYLAGELPSSLGNLSRLVELDFSSNNFINSIPPELGNLKSLVTLSLSYNSFSGPIHSALCHLDNL THLFMDHNRLEGALPREIGNMRNLEILDVSYNTLNGPIPRTLGRLAKLRSLIFHVNKINGSIPFEIRNLTNLEYLDLSSNILGGSIPSTLGLLSNLNFVD LLGNQINGPIPLKIGNLTNLQYLHLGGNKITGFIPFSLGNLKSLTMLDLSHNQINGSIPLEIQNLTNLKELYLSSNSISGSIPSTLGLLSNLISLDLSDN QITGLIPFLLGNLTSLIILDLSHNQINGSTPLETQNLTNLKELYLSSNSISGSIPSTLGLLSNLTFLDLSNNQITGLIPFLLDNLTSLIILDLSHNQING SIPLKIQNLTNLEELYLSSNSTSGSIPSTLSLLSNLILLDLSYNQITGLIPFLLGNLTNLTTLYLSHNQINGSIPSSLKYCNNLAYLDLSFNNLSEEIPS ELYDLDSLQYVNFSYNNLSGSVSLPLPPPFNFHFTCDFVHGQINNDSATLKATAFEGNKDLHPDFSRCPSIYPPPSKTYLLPSKDSRIIHSIKIFLPITT ISLCLLCLGCYLSRCKATEPETTSSKNGDLFSIWNYDGRIAYEDIIAATENFDLRYCIGTGGYGSVYRAQLPSGKLVALKKLHRREAEEPAFDKSFKNEV ELLTQIRHRSIVKLYGFCLHQRCMFLVYEYMEKGSLFCALRNDVGAVELKWMKRAHIIEDIAHALSYLHHECNPPIVHRDISSSNVLLNSESKSFVADFG VARLLDPDSSNHTVLAGTYGYIAPELAYTMVVTEKCDVYSFGVVALETLMGRHPGDILSSSAQAITLKEVLDPRLPPPTNEIVIQNICTIASLIFSCLHS NPKNRPSMKFVSQEFLSPKRLLGGLEISLLELRNLDMHTNVGEITVPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008375 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008450 [exp]	1.41	0.9717
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G007925 [exp]	3.00	0.9248
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.019G018900 [exp]	10.00	0.9086
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	14.79	0.8360
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.002G047300 [exp]	35.07	0.9024	Pt-ACCAL.7
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.007G005800 [exp]	36.87	0.8782
					Potri.003G012000 [exp]	38.30	0.8616
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.001G033800 [exp]	41.18	0.8539
AT4G19950			unknown protein		Potri.007G105600 [exp]	44.22	0.7893	Pt-ORF.7
					Potri.017G044550 [exp]	46.82	0.8479

Compare expression of checked genes

Potri.002G008375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.