Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 461 / 2e-149 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 442 / 1e-141 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 406 / 7e-128 Leucine-rich repeat protein kinase family protein (.1) AT5G49660 386 / 2e-121 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G33170 381 / 2e-118 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 383 / 4e-118 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 380 / 4e-117 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 377 / 4e-117 Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 372 / 1e-116 ERL1 ERECTA-like 1 (.1.2) AT4G20270 371 / 1e-115 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007925 [exp] 1007 / 0 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008100 [exp] 934 / 0 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008175 [exp] 905 / 0 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008375 [exp] 777 / 0 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 513 / 1e-169 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 489 / 4e-161 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 488 / 5e-161 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 487 / 3e-160 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 486 / 3e-160 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019036 [exp] 472 / 2e-153 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 460 / 6e-152 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 459 / 1e-147 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 457 / 1e-147 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 456 / 2e-147 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 451 / 1e-145 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 395 / 6e-124 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 385 / 8e-120 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10023677 [exp] 375 / 2e-116 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039872 [exp] 363 / 9e-115 AT1G28440 942 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G008450.1 pacid=42778669 polypeptide=Potri.002G008450.1.p locus=Potri.002G008450 ID=Potri.002G008450.1.v4.1 annot-version=v4.1 ATGAACTTTTCTTGCTTCTCAAACCTTGTCCGTCTCCACCTGCCCAACCATGAGCTCAATGGAAGCATCCCGCCTCAAATTTCTATCCTCCCACAACTCA GATACCTCAACCTGTCCTCAAATAATCTAGCAGGTGAGTTACCGTCTTCACTTGGAAATCTCAGCCGATTAGTTGAGCTTGATTTTTCTTCCAATAATTT CATCAATTCCATCCCTCCAGAACTAAGCAATCTTAAAAATCTTGTTACTTTGACCTTGTCTGATAACAGCTTCAGCGGCCCAATCCCTTCGGCACTTTGT CATTTGGAAAATCTAAGGCATTTATTTATGGATCATAATAGTCTCGAAGGTGCCCTCCCTAGAGAAATAGGGAACATGAGAAATCTAGAGAGTTTGGACG TGAGTTATAATACACTTAATGGTCCAATCCCTCGAACATTGGGTAGGTTAGCCAAGTTGAGGTCTTTGATCCTTTCTCGCAACGCAATCAATGGATTCAT CCCTTTAGAAATAGGAAATTTGACGAATCTAAAAGATTTACAGCTTATATCTAATATCCTAGTTGGTTCAATTCCTTCAACGATAGGTTTTTTATCCGAT TTGACTAATCTAGATCTTTCTTATAACGTAATCAATGGATCCATCCCTTCGCAAATAGGAAATTTGACGAATCTAGAACATTTAGATCTTTCCTCTAATA TCCTAGCTGGTTCAATTCCTTCTACATTTGGTTTTTTATCCAATTTGATTCTTTTGCATCTTTTTGACAACCAAATCAATGGATCCATCTCTTTAGAAAT AGGAAATTTGACAAATCTATGTCGTTTGTTTCTCAAAGGCAACAAAATCAGTGGTTCGATTCCTATTTCATTAGGAGATTTAAGAAACTTGGCATTTCTA GACCTATCTAACAACCAAATCAATGGATCCATAGCTTCATCTTTGAAGAATTGTAAATATTTGACCTATCTAGATTTGAGCTACAATAATTTAAGTGGAC AAATACCCTCCCAACTACATAATTTGCCCTCTTTATCTTATGTGAATTTTCGTTATAATAACCTCTCAGGCTTTGTTCCCTTGCAATTGCCACAACCCTT TGATGTGTCTTTCACCTGTGATTCTCTTCATGGGCAAAGAACCAACAGTCCTGAAATTTTTCAAGCTACTGTATTTGAGGGCAACAAAGATTTACACCCT GATTTCTCACCGACCGAGAACTTCGACCTCAGATATTGTATCGGATCCGGTGGTTATGGGAGCGTCTACCGAGCACAACTTCCAAGTGGGAAATTAGTTG CCTTGAAGAAACTTCATCATCGCGAGGCAGAGGAGCCGGCTTTTGACAAGAGTTTAAAAAATGAGGTGGAACTGCTCACACAAATACGTCACAGGAGCAT TGTAAAGCTTTATGGATTCTGTTTGCACCAGCGCTGCATGTTTCTTGTTTACGAGTACATGGAAAAGGGAAGCTTGTTTTGTGCCTTGAGAAATGATGTT GGAGCCGTGGAACTGAAGTGGATGAAAAGAGCACACATCATCAAAGACATTGCTCACGCATTATCTTACTTGCATCATGATTGCAACCCACCAATTGTTC ATCGAGACATATCAAGCAGCAATGTTCTGTTGAATTCAGAATTCAAGTCTTTTGTTGCTGATTTTGGTGTGGCTAGACTTCTCGATCCTGATTCGTCCAA CCATACTGTACTTGCTGGTACCTATGGATACATTGCCCCAGAGCTGGCTTATACTATGGCGGTGACAGAGAAATGTGATGTTTACAGCTTCGGAGTTGTG GCGCTTGAAACTTTGATGGGAAGGCATCCGGGAGATATCCTATCATCATCTGCTCAGGCTATTACACTGAAAGAAGTGTTAGATCCTCGTTTGCCACCTC CAACAAATGAGATTGTCATACAGAATATATGTACCATTGCAAGTCTGATATTTTCTTGCTTACATTCAAATCCAAAATATCGACCTTCAATGAAATTCGT GTCTCAAGAATTTCTATCTCCCAAGAGATTATTGGGAGGTCTCGAGATTTCTTTCTTGGAACTGCGAAATCTTGGCATGCACACAAATGTAGGTGAGATC ACAGTTCCTCGCTGA
AA sequence Show only first row Show all	>Potri.002G008450.1 pacid=42778669 polypeptide=Potri.002G008450.1.p locus=Potri.002G008450 ID=Potri.002G008450.1.v4.1 annot-version=v4.1 MNFSCFSNLVRLHLPNHELNGSIPPQISILPQLRYLNLSSNNLAGELPSSLGNLSRLVELDFSSNNFINSIPPELSNLKNLVTLTLSDNSFSGPIPSALC HLENLRHLFMDHNSLEGALPREIGNMRNLESLDVSYNTLNGPIPRTLGRLAKLRSLILSRNAINGFIPLEIGNLTNLKDLQLISNILVGSIPSTIGFLSD LTNLDLSYNVINGSIPSQIGNLTNLEHLDLSSNILAGSIPSTFGFLSNLILLHLFDNQINGSISLEIGNLTNLCRLFLKGNKISGSIPISLGDLRNLAFL DLSNNQINGSIASSLKNCKYLTYLDLSYNNLSGQIPSQLHNLPSLSYVNFRYNNLSGFVPLQLPQPFDVSFTCDSLHGQRTNSPEIFQATVFEGNKDLHP DFSPTENFDLRYCIGSGGYGSVYRAQLPSGKLVALKKLHHREAEEPAFDKSLKNEVELLTQIRHRSIVKLYGFCLHQRCMFLVYEYMEKGSLFCALRNDV GAVELKWMKRAHIIKDIAHALSYLHHDCNPPIVHRDISSSNVLLNSEFKSFVADFGVARLLDPDSSNHTVLAGTYGYIAPELAYTMAVTEKCDVYSFGVV ALETLMGRHPGDILSSSAQAITLKEVLDPRLPPPTNEIVIQNICTIASLIFSCLHSNPKYRPSMKFVSQEFLSPKRLLGGLEISFLELRNLGMHTNVGEI TVPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008450 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008375 [exp]	1.41	0.9717
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G007925 [exp]	2.44	0.9323
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	22.80	0.8049
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.019G018900 [exp]	26.36	0.8661
					Potri.003G012000 [exp]	36.66	0.8516
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.002G047300 [exp]	41.56	0.8595	Pt-ACCAL.7
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.007G005800 [exp]	46.47	0.8461
AT4G19950			unknown protein		Potri.007G105600 [exp]	91.65	0.7545	Pt-ORF.7
AT3G24130			Pectin lyase-like superfamily ...		Potri.017G054700 [exp]	105.73	0.8126
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.005G054000 [exp]	120.81	0.7940

Compare expression of checked genes

Potri.002G008450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.