Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20760 825 / 0 Calcium-binding EF hand family protein (.1) AT1G21630 594 / 0 Calcium-binding EF hand family protein (.1.2) AT4G05520 82 / 8e-16 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 77 / 4e-14 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253000 [exp] 1526 / 0 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.007G063200 [exp] 704 / 0 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 697 / 0 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.002G008300 [exp] 149 / 2e-42 AT1G20760 57 / 5e-11 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 86 / 4e-17 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 77 / 2e-14 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012248 [exp] 1098 / 0 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016028 [exp] 979 / 0 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016689 [exp] 590 / 0 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10035983 [exp] 348 / 1e-107 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10035982 [exp] 294 / 1e-86 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10043181 [exp] 82 / 8e-16 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 82 / 1e-15 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF12763 [poplar] [flax] EF-hand_4 Cytoskeletal-regulatory complex EF hand
Representative CDS sequence Show only first row Show all	>Potri.002G008600.6 pacid=42779565 polypeptide=Potri.002G008600.6.p locus=Potri.002G008600 ID=Potri.002G008600.6.v4.1 annot-version=v4.1 ATGGCGGTGCCAAACATGGATCAATTCGAAGCGTACTTTAAGAGAGCTGATTTAGATGGGGATGGAAGAATCAGTGGAGCTGAAGCTGTCTCTTTCTTTC AAGGATCCAATTTGCCCAAACAAGTCCTTGCTCAGATATGGATGCATGCTGATCAGAGTCGAACTGGCTTCCTTGGCCGGCCGGAGTTTTTTAATGCTTT AAGACTTGTAACTGTTGCTCAGAGTAAGCGAGATTTGACACCGGACATTGTCAAGGCAGCATTATATGGACCGGCTGCAGCAAAAATCCCCCCACCGCAA ATTAATCTTCAAGCCACAGCTGCTGCGCCTCAAATGGCGGCGGCTTCACCTGTGCCGCAGATGGGTTCTGCTGCCCCAACAACATCTCAAGGTTTTGGTT TTAGAGGACCAGGAGTTCCAACGGCTGCGCCTCAAATGGTTGCTTCATCTGCCACGCAGATGGGTGCTGTTGCTCCGACAGCATCTCAAGGTTTTGGCTT TAGAGGACCAGGAGTTCCAAATGCTACTATGAACCAACAGTACTTTCCTCGGCATGGTCAAACTATGAGACCACTTCAGGGTGTCCCTCCAGGAACTGCT TCCCGTCCACCTCAGGGTATGCCTGCCATTAGTCTGGGGGGTCCATCGTCAGTAATGCTTACTGGAACTGCTTCCCGACCTCCTCAGGGTATGCCTTCCA GTAGTCTGGGGGGTCCATCATTCATAATGCCTACTGGAACCACCCCCCGTCCACCTCAATTCATGTCTGGTGGTTCTGCTGGTCCAACTCCCAGTGTCTC AAACCCGAACATATCAAGTGATTGGCTTGGTGGAAGGACTGGTGGAGCTCCAACTAGCCCTGGAGGGGTCCAGCCATCTATTCCCACCACTACTTCCCAG CCGCGACCTCTAAGCTCAGTTTCCTCTCAGCCCATTGCTAATGATTCTAAAGTTGTTTCTGGAAATGGGTTCGCCTCTGATTCGTTTTTCGGTGGTGATG TGTTTTCTGCAACCCCTACTGCAACAAAACAAGAACCCCCTCTGCCTACTTCTTCAGCTACCAGTGGCACACAAGCTCCCATTAAGTCCGGCTCACTTGA TTCACTGTTGAAAGCTGTTAACAACCCAACCTCATCTTCCATTGTCTCGGGTTCTAGTGATGCCCAAGCCCGAGGTCCAGTTAAGTCCAGCTCACTTGAT TCACTTCAGAGTGCTTTTGCTGTGCAACCTCTGGGTGGTCAGCCTGAACGAACCCAATCATTAGCGAGCCCAGGCCCACAAGTTTCAGCTTCAAATTCTG CCTCACTTGTGTCACCTGGCATTTCAGTTGGAGTTGGAAAATCTTCTGATAGCACACAGCTTTCATGGCCAAAGATGAAACCAACAGACATTCAGAAGTA TAATAAAGTTTTTATGGAAGTAGATACTGACAGAGATGGAAGAATCACTGGTGAGCAGGCACGGAATCTTTTTTTGAGCTGGAGGCTACCAAGAGAGATT TTAAAGCAGGTCTGGGATTTATCTGATCAGGATAGTGACAGCATGCTTTCTTTGAGGGAATTCTGCTTTGCCCTTTATTTGATGGAGCGGTACAGGGAAG GCCATCCTCTTCCAGCAGCTCTTCCAAGTAATATTATGTACGACGAGACCTTGTTGTCCATGACGGGTCAACCCAAAGTTGCTTATGGAAGTGCTGCTTG GGGTCCTGGTTTTGGACAGCAGCCTACACGATCCATGGCCCCTGTCCCTGGCATGAGGCCACCTGTTCCAGTAACTGCCTCCCAGCCTGATGGTGTCATG GTAAACAATCAACACAAGTCAGGAGCTCCAGTGTTGGAGGATTCCTTTTTGAACCAACATGATGGCGGAGAGCAGAGTTCAGCAAACTCAATGATTCAAG ATGGAACAGCCTCAGAGAAAAAGAGTGATGAAACAGAGAAGCTGATTTTGGACTCCAAAGAGAAGATTGAGTTTTACCGTTCTAAAATGCAGGATCTTGT TCTGTATAAAAGCAGATGTGATAATAGGCTAAATGAAATCACAGAAAGGGCTTTGGCAGATAAACGTGAGGCAGAGTTGCTGGGTAAGAAATATGAAGAG AAGTACAAGCAAGTTGCAGAAGTGGCATCTAAATTAACAATTGAAGAGGCAACTTTTCGTGACATTCAGGAGAGAAAGCTGGAGTTGCGTCAAGCAATAA CTAACATGGAACAAGGTGGCAGTGCGGATGGTATTCTTCAGGTTCGTGCTGATCGTATACAATCAGACCTTGATGAGCTATTGAAGGTTTTAACTGAACG CTGCAAGAAACATGGACTGGATGTTAAGTCAACTGCCGTGATTGAGCTTCCTTTTGGCTGGCAACCAGGAATTCAAGAGGGTGCTGCTACTTGGGATGAA GATTGGGATAAGTTTGAAGATGAAGGGTTTTCCAATGAGCTCACTGTTGATGTGAAAAGTGCTCCTGGTCAAAAGGAGAGAGCACCTGCGGATGGTAGTT TAACCCCTGATTCATTGTCAAATGGAGATGGGAGGTCTGGAATTTTTACTGGAGAACATGTGCTTGAGAGTGAATCTGCATATTTCCACAGTGGAGATGA AATTGCAAGAAGCCCTCAAGGCAGTCCAGCTGGAAGGGCTGCTTCAGAAAGTCCATCTCAAGACTTTGCTGATGTTTTTGCCAAGAATACTGAAGCAGAT ATAGATACCCATAGAAGTTTTGATGAATCAACTTGGGGTGCCTTTGACACAAATGATGATGTGGACTCAGTCTGGGGATTTAACCCTGCAGGCAACAAGC AGGACTCTTCTGAGAACGAGAGAGATTTCTTTGGATCTGATGATTTTGGTCTAAAGCCAATCAGAACGGAATCCACACCAACAACGAATACTTTCCAGAA AAAGAGTATATTTTTTGAAGAATCTGTTGCAGGTTCCCCAATGTCAAGATTTGGCAACTCTCCAAGGTTCAGCGAAGCAGGGGACCATTTTGACAATTAC TCGAGATTTGATTCCTTCAGCATGAATGAAGGAGGCTTTTCACCACGAGAAAAGCTTACAAGGTTCGACTCCATAAACAGTTCCAAAGATTTTGGCCACA GTCGTGCATTCTCTTCATTTGATGATGGAGATCCATTTGGCTCCAGTGCCCCCTTTAAGGTTTCATCTGAAGATCAAACTCCCAAAAAGAGTTCTGGCAA TTGGAGTTCTTTCTAG
AA sequence Show only first row Show all	>Potri.002G008600.6 pacid=42779565 polypeptide=Potri.002G008600.6.p locus=Potri.002G008600 ID=Potri.002G008600.6.v4.1 annot-version=v4.1 MAVPNMDQFEAYFKRADLDGDGRISGAEAVSFFQGSNLPKQVLAQIWMHADQSRTGFLGRPEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPPPQ INLQATAAAPQMAAASPVPQMGSAAPTTSQGFGFRGPGVPTAAPQMVASSATQMGAVAPTASQGFGFRGPGVPNATMNQQYFPRHGQTMRPLQGVPPGTA SRPPQGMPAISLGGPSSVMLTGTASRPPQGMPSSSLGGPSFIMPTGTTPRPPQFMSGGSAGPTPSVSNPNISSDWLGGRTGGAPTSPGGVQPSIPTTTSQ PRPLSSVSSQPIANDSKVVSGNGFASDSFFGGDVFSATPTATKQEPPLPTSSATSGTQAPIKSGSLDSLLKAVNNPTSSSIVSGSSDAQARGPVKSSSLD SLQSAFAVQPLGGQPERTQSLASPGPQVSASNSASLVSPGISVGVGKSSDSTQLSWPKMKPTDIQKYNKVFMEVDTDRDGRITGEQARNLFLSWRLPREI LKQVWDLSDQDSDSMLSLREFCFALYLMERYREGHPLPAALPSNIMYDETLLSMTGQPKVAYGSAAWGPGFGQQPTRSMAPVPGMRPPVPVTASQPDGVM VNNQHKSGAPVLEDSFLNQHDGGEQSSANSMIQDGTASEKKSDETEKLILDSKEKIEFYRSKMQDLVLYKSRCDNRLNEITERALADKREAELLGKKYEE KYKQVAEVASKLTIEEATFRDIQERKLELRQAITNMEQGGSADGILQVRADRIQSDLDELLKVLTERCKKHGLDVKSTAVIELPFGWQPGIQEGAATWDE DWDKFEDEGFSNELTVDVKSAPGQKERAPADGSLTPDSLSNGDGRSGIFTGEHVLESESAYFHSGDEIARSPQGSPAGRAASESPSQDFADVFAKNTEAD IDTHRSFDESTWGAFDTNDDVDSVWGFNPAGNKQDSSENERDFFGSDDFGLKPIRTESTPTTNTFQKKSIFFEESVAGSPMSRFGNSPRFSEAGDHFDNY SRFDSFSMNEGGFSPREKLTRFDSINSSKDFGHSRAFSSFDDGDPFGSSAPFKVSSEDQTPKKSSGNWSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20760			Calcium-binding EF hand family...		Potri.002G008600 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	2.00	0.8384
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	6.00	0.7876
AT5G58000			Reticulon family protein (.1)		Potri.006G185700 [exp]	6.92	0.7372
AT3G17900			unknown protein		Potri.010G033900 [exp]	8.24	0.7494
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	10.24	0.7938
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.008G174800 [exp]	10.24	0.7530
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	13.11	0.8026
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	13.56	0.7729
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.010G226600 [exp]	15.16	0.7383
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	18.76	0.7406	CEF.2

Compare expression of checked genes

Potri.002G008600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.