Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20720 1164 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20750 1010 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G79950 380 / 3e-113 RAD3-like DNA-binding helicase protein (.1) AT2G05635 128 / 5e-34 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1) AT1G79890 118 / 1e-26 RAD3-like DNA-binding helicase protein (.1) AT1G03190 113 / 4e-25 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180200 [exp] 372 / 2e-110 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 206 / 3e-54 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 117 / 1e-26 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012249 [exp] 1333 / 0 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 1206 / 0 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011460 [exp] 337 / 6e-98 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 220 / 1e-58 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 204 / 7e-54 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 116 / 4e-26 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10037548 [exp] 107 / 2e-23 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 59 / 2e-08 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06733 [poplar] [flax] DEAD_2 DEAD_2 CL0023 [poplar] [flax] P-loop_NTPase PF13307 [poplar] [flax] Helicase_C_2 Helicase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G008700.1 pacid=42778407 polypeptide=Potri.002G008700.1.p locus=Potri.002G008700 ID=Potri.002G008700.1.v4.1 annot-version=v4.1 ATGGTGAAACCAACACCAGTAAAATGCACAAACCCTGACCCTAAAAAATCCTACCACATAGGAGGAATTCAAGTGGAATTCCCATACAAACCATATGGAA CGCAGCTCGCATTCATGGGCAGAGTCATTTCCACGCTCGATCGAGCCCAAAGAGACGGCCATTGTCACGCTTTACTCGAATCCCCTACCGGTACTGGAAA ATCGCTCTCGCTTCTTTGTTCCACTCTCGCCTGGCAACAGAATTACAAATTAAAGAATCAGTACGCTAATCTCACTCACTCTACACCGAATCCCGAGGCA ATCACCGATCCTCTCGCTCACGGCGGTGGATTTGTTCCAGAATCAACGCCTTCAAGTACTGAACCTACAGCGGCTGTGGAGCTGGCTCAAAAGGTGGCAA GTAACAAAAAGAAAAAGGCTGTGCCAAAGATATACTATGCTTCGAGGACACATTCCCAAATTTCCCAAGTGGTTAGCGAATTTCGTAAAACTACGTATAG GGTGCCAATGGCAGTGTTGGCTTCAAGGAAACATTACTGCACAAATGTACATGTAAATAGGAAAGAGAATGTCGATGAAGAATGTAAGCTGCTTTTGAAG GACAAGGAGGCTGGATGCCTACAATTCAAAAATGCAAATAAAGTCAGAGGTCATCCTTCGCTTCAAAAAGGAGGTTGCCATGAGGTGCATGACATCGAAG ATCTTGTTAAAGTTGGACAAGTTGTTAAAGGTTGTTCATACTATGCAGCTCGCTCTATGGCAGATGATGCACAGTTGGTTTTCTGTCCGTACAATTACAT AATTAATCCAGTCATTCGAGGAGCAATGGAAGTAGACATTATAGGAGCCATTCTTGTTCTTGATGAAGCCCACAACATAGAAGACATTGCTCGTGATGCT GGTAGTGTGGATGTTGAAGAAGATGTCTTGCAAAAATTGCAGACCGAATTGCAGGAACTCTGTCCAGTTGATCCCATGATTTACCAACCATTATATGAAA TGGCACAAGACTTGTTAAGTTGGATTGAACGGAGGAAAAATAAGCTGGAGAAGCGTGAATTTCAGCACTACTGCTCTTGTTGGGCTGGTGATAAGGCTTT GAGGGAGTTCCAAGAAGCCAATATTTCACAGCAGTGCTTCCCAATCTTGCTGGATTGTGCTAAACAGGCTATCAAAGCTGCAACAGATACGGAAGCAGAG GGCTCTCATTTAAGTGGCATGTCGGTGGTATTATTGGAAGGGTTATTCTCTTCACTCACTTATTTCTTCTCAAGAAATGGATGTCAGGTATCTGATTTTC AGCTTGCTTTGCGGCGATATGTTAAAAGAGATGGAAAAAAGGCTGGTGACTGGACTTGTACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTCGTGTTCAA AGACATAGCTGATCTTTCTTTGTCAGTCATTTTAACATCAGGGACTTTGTCACCAATGAATTCTTTCTCATCTGAACTTGGGGTTCAGTTTGGAACTTGT CTGGAAGCTCCGCATGTAGTTGATGTTGAATCGCAGGTGTGTGTTTCTGTAATATCGACCAGTCCTGATAATTATCCATTGAATGCGAGTTACAAAACAG CAGATTGTTATGCCTTCCAGGATGCCCTTGGCAAATCATTGGAGGAAATCTGCAAGATTGTTCCTGCAGGCTCTCTCGTGTTCTTCCCTAGCTATAAACT GATGGAAAAGCTGAGCAATCGTTGGCGTGAAACAGGCCAATGGTCGCGATTAAATGCAAGAAAGCCCCTCTTTGTTGAGCCCAGAGGAGGAAGCCAGGAG GATTTTGACTCGATTTTGAAGGGTTATTATGACTGCATTCGTCGAGACAAAAGACCTGCTCTTGGGAGAAAGAGAAAGGTCAAAAAAGTGGATGCCAATC ACTTAGATGGAACTGAATCAACCGACAATTCTGAGAAAGGAGGAGCTGCATTTCTTGCCGTTTGTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGA TGATTATGCTCGGGTAGTTATAGTAGTTGGCATTCCATTTCCAAACATAAATGATATTCAAGTTGGTTTGAAGAAGAAATATAATGATGCATACAAAACG TCCAAAAACCTTCTTGGTGGAAATGAGTGGTACTGTCAACAAGCCTTTCGAGCTCTCAATCAAGCTGCTGGACGCTGTATACGGCATAAGTTTGACTATG GGTCCATCATCCTATTAGATGAGCGTTATAAGGAAGAACGGAATAGAGTATACATCTCGAAATGGCTAAGGAAATCGATTCAACAGCACAACAACTTTGA CATGTCTCTAGAAGTATTGAGATCCTTTTACAGGAATGCCAAGGAGAAGGTTGGCAAGAATATGGAAGAATTCTTGCTGAATTCTGATGCTCACAAGGAG AAAAATATCCCTCGAATGGATCAAATCGTAGGGCACACAAGAAACAAAAGTCAGAAACTGAGCAATTCTGATCAGTATGGAGAGAAAATAGTCTCTTTGA CAAAGTGTGAAGGTGCTGTTTCAAAACTGAAGTCCCAAGATGATGTTGAAGTACAGGCTTCTTTTCAAATAGACGATGAGTTGGAAAGCTCTCAAGAAAT CATTGACCTAGAGTGTGATTCCCATATAGGTTCAAGGTGCTCTGAGGCATCTTTCCATGAAGATCCAGAAATAACCCTTGTCGAGGAAACCCCTGGCATG GGTGAATGTGGAGCTGCAACCAGTCCGGGATTCTTCTCAAAGGATGGCAACTCTAGCTCAACCATGATGCAGGCCCCTAATGAGCTTGCAGATCAAGGGT TAGTCTCTTTGGTGTCTGTGACAAACCAAAGTGCTGCTCCAGACAAATCTCAGTGTTCAATGTTGGTTACTCCTGAAAAAGAGTTAACTATAACTACCTG CAACCTGAGACCAGAAGTAGAGTCATCTTTGAATCTAAGTGTTAATTCTCATACACAGAAACGGAGGAAGTCCATGGACTTATCATTAATGAACCTTCAA GGAGAACAATCTGATACCTCCTATGCTGAAACTCCTGGCTGTGTTAGTTTCACTAGAAGCTCAGTCACTAGTGGAGACACAAATCGCAGGATTGAATTTG GTTTGGAGACAAGCTGTAGAGAACGTCAATCTACCAAGCATGCTTCTCCATTGCTGCCTAATTCTTGTGCCACTTCATGTGCATCTTCTGATTCTCTCAT GGACAAGAGATTGCAAATTTCCTGCTCCCTCTGCAAAAGCCCATTGGGTCGTCCTGAGAACAACCTGTATGTTGAGTGCTCTTTGACTTCTTCATCAAAG GTTCACCTAGCGTCTCTTGTGAAAGAAAGAATGGAGCGTTGTGCCAAGAACAACTCAACATGTGTACCAGTTCTCGTGACTGACATCTCATCAGTTGATC AGCGTCTCTGCAATATTGCTCTTCAAGATGCCCAGCAAAAAGGAGTCTGGAGTGAAGAAGATGGCTGTGTTTTCAACTCAGTTTTTTGTCCCTTTTGCAG TATGTCTAATTGCCTTGGAGTGAAGATCATGGCAACAGATGCATCAAATGTTCAGTTACTTAACAAAATATTATTCTATACTGATTGTCTGGAATTTCAG AATCTTGAAGCATCAAAGGACTTAGAACCTATGGATAAGGATTTGTCGCCAGTAACCCGCACAGCCATGGATAAAACTGCCTTGTTGAACTCCCTTGATA GATTCTCATATTCCACACAACCTATTTCTGGAGGCTGGAGGACTACAAAGTCAAAGTTGAGACTACCGAAGAGAGACGTGCTTTCTAATACGCAAGGTTA A
AA sequence Show only first row Show all	>Potri.002G008700.1 pacid=42778407 polypeptide=Potri.002G008700.1.p locus=Potri.002G008700 ID=Potri.002G008700.1.v4.1 annot-version=v4.1 MVKPTPVKCTNPDPKKSYHIGGIQVEFPYKPYGTQLAFMGRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNYKLKNQYANLTHSTPNPEA ITDPLAHGGGFVPESTPSSTEPTAAVELAQKVASNKKKKAVPKIYYASRTHSQISQVVSEFRKTTYRVPMAVLASRKHYCTNVHVNRKENVDEECKLLLK DKEAGCLQFKNANKVRGHPSLQKGGCHEVHDIEDLVKVGQVVKGCSYYAARSMADDAQLVFCPYNYIINPVIRGAMEVDIIGAILVLDEAHNIEDIARDA GSVDVEEDVLQKLQTELQELCPVDPMIYQPLYEMAQDLLSWIERRKNKLEKREFQHYCSCWAGDKALREFQEANISQQCFPILLDCAKQAIKAATDTEAE GSHLSGMSVVLLEGLFSSLTYFFSRNGCQVSDFQLALRRYVKRDGKKAGDWTCTLSLWCLNPAVVFKDIADLSLSVILTSGTLSPMNSFSSELGVQFGTC LEAPHVVDVESQVCVSVISTSPDNYPLNASYKTADCYAFQDALGKSLEEICKIVPAGSLVFFPSYKLMEKLSNRWRETGQWSRLNARKPLFVEPRGGSQE DFDSILKGYYDCIRRDKRPALGRKRKVKKVDANHLDGTESTDNSEKGGAAFLAVCRGKVSEGIDFSDDYARVVIVVGIPFPNINDIQVGLKKKYNDAYKT SKNLLGGNEWYCQQAFRALNQAAGRCIRHKFDYGSIILLDERYKEERNRVYISKWLRKSIQQHNNFDMSLEVLRSFYRNAKEKVGKNMEEFLLNSDAHKE KNIPRMDQIVGHTRNKSQKLSNSDQYGEKIVSLTKCEGAVSKLKSQDDVEVQASFQIDDELESSQEIIDLECDSHIGSRCSEASFHEDPEITLVEETPGM GECGAATSPGFFSKDGNSSSTMMQAPNELADQGLVSLVSVTNQSAAPDKSQCSMLVTPEKELTITTCNLRPEVESSLNLSVNSHTQKRRKSMDLSLMNLQ GEQSDTSYAETPGCVSFTRSSVTSGDTNRRIEFGLETSCRERQSTKHASPLLPNSCATSCASSDSLMDKRLQISCSLCKSPLGRPENNLYVECSLTSSSK VHLASLVKERMERCAKNNSTCVPVLVTDISSVDQRLCNIALQDAQQKGVWSEEDGCVFNSVFCPFCSMSNCLGVKIMATDASNVQLLNKILFYTDCLEFQ NLEASKDLEPMDKDLSPVTRTAMDKTALLNSLDRFSYSTQPISGGWRTTKSKLRLPKRDVLSNTQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	0	1
AT2G45700			sterile alpha motif (SAM) doma...		Potri.006G218300 [exp]	1.41	0.8739
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.010G185500 [exp]	2.44	0.8731
AT4G22600			unknown protein		Potri.001G120700 [exp]	2.64	0.8247
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	7.41	0.8389	Pt-CYCB2.2
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	10.39	0.8277
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	14.14	0.8051
AT1G48560			unknown protein		Potri.003G188600 [exp]	15.65	0.7566
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	17.32	0.8023
AT4G10890			unknown protein		Potri.007G058050 [exp]	17.34	0.7488
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	17.43	0.8414

Compare expression of checked genes

Potri.002G008700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.