Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BRD901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 448 / 4e-149 DNA-binding bromodomain-containing protein (.1) AT1G76380 395 / 2e-129 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 271 / 3e-79 DNA-binding bromodomain-containing protein (.1.2) AT3G01770 73 / 4e-13 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 69 / 7e-12 DNA-binding bromodomain-containing protein (.1) AT1G32750 66 / 9e-11 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT5G14270 64 / 2e-10 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G54610 61 / 2e-09 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT5G63320 60 / 4e-09 NPX1 nuclear protein X1 (.1.2.3) AT3G27260 58 / 2e-08 GTE8 global transcription factor group E8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252200 [exp] 961 / 0 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 384 / 3e-123 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 337 / 4e-105 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 145 / 5e-36 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 139 / 4e-34 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 135 / 7e-33 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 74 / 2e-13 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 72 / 7e-13 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 71 / 1e-12 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013220 [exp] 463 / 7e-155 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 440 / 5e-146 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10022999 [exp] 305 / 2e-95 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 300 / 1e-93 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 270 / 6e-79 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 265 / 7e-77 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10011989 [exp] 67 / 2e-11 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10033624 [exp] 67 / 6e-11 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 66 / 6e-11 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10039630 [exp] 66 / 6e-11 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.002G009100.1 pacid=42778860 polypeptide=Potri.002G009100.1.p locus=Potri.002G009100 ID=Potri.002G009100.1.v4.1 annot-version=v4.1 ATGGGCGAGGAAGCAGACCCAACAATGAAGAAGAAGAAGAAAAAGGGACGTCCTTCTCTTCTAGAGCTTCAAAAACGCTCCCTCAAACAACAACAGCTAC AGCAAACAACCCCTATTTCTCTTAAAAACCCTAATCCTCTCAATTCCAATTCTGCCCTCCCTAACCGTCGATCCGCTCGCCGGAGCTCTAATTCCTATGC ACCGGAGTGGATTGACGGAGACGACGACGAAGACGATGAGCGTAAAGAGAAGAAGCATAAGCTCTTGCGCGGATTGAATTCTCAGAAAAATAACAATCAG AATTCCAATTCGTCGAGCCCTTCGAATTTGCACGGCTCTGATTCGAATGCTGGTGGCGGTAATCAAGAGGACGGAATTAGAAGGCGCAAGATCAGCGCCG TCCGTCTTGGATCTGATGATTTGGGTGAAAAGGTTTTGAAAGGGACAGACACTATTCATGGGTCATCTGTGGAGCCTGGTCCCACTACACCTTTGCCAGA CAAAAAGTTGTTGGTCTTCATTCTTGACAGACTTCAAAAGAAGGACACCTATGGGGTTTTCTCTGAGCCAGTGGATCCAGAAGAGCTTCCTGATTACTTT GACATCGTTGAGAATCCCATGGATTTTTCTACAGTGAGGAAAAAGTTAGATGAGGGAGCCTACGCCCACTTGGAACAATTTGAGAAAGATGTTCTTTTGA TATGCTCAAATGCAATGCAGTACAACCCTTCCGATACTATTTACTTCCGACAGGCAAGGGCCATGCAAGAGCTTGCAAAGAAGGACTTTGAGAATCTTAG GCAAGATAGTGATGATAGTGAACCACAAACTAAGGTTGCGAGGAGAGGGAGGCCACCAGCCCTAGGCAAGCTGAAAAAGGCACTTGAGAGGTCTCCAATT GACCGTGTTGGTCCTGAAGCTTCCTCGGATGCAACTCTTGCCACCGGAGGAGATCACAATAACTTGTCCAATGGTTACAATCTCAGAAAAAGTTCTTCAT ACAAGTACCAGCCTGGTGATGCATTTGTCCGGGCCTCTTACAGCAGTGAAAATTATTCTACCTGGTTATCTGAATGGGAAAATGAATTTCCAGCATCTGT TGTAAAGGCTGTGATGAAGTATGGAAAGAAACCGTTTGTGCTAGATGAGAACAAGCGTGACACCTATAAGCATCCATTGGGCTCCCATGAGCCATCCATC TTATCGACCTTTGAAGGAGAATTAAAGCAATTAGTGGTGGTAGGTTTAAGCTCTGAGCACGGTTATGCAAGAAGTCTGGCTCGATTTGCTGCTGATCTTG GCCCTGTTGTTTGGAGAATTGCTTCGAAGAAAATTGAAAGTGTTTTGCCAACAGGACTTGAGTTTGGCCCTGGGTGGGTAGGAGAAAATAAAGCAATGGA GAAGCAAAAGATTTTAAACAACCTTGTATCTGATAACCATTTAAGCAGATTTCAACCTGCTGCTTCTTCAAGTAGAGAGGCAGCATGGAATAGAGAAGGC CTGCCAGAAACTGTTGGCGGGTTAAATCCTCAAAATGAGTTAGCTACACTGAACAGTGGTGCTGGTGGGATGAAATCCATGCCTTCTCTCCAGATTCAGC AGAAACCAATAATTCATCCTGATATGAATGGTTTCAGTGGAGGATTTGGATATAACTCTTCACCTCAACCGGGGATGGCACGAACTGTGGCACCGACAGG AAAGCTCAATTTGGAGCAGACTGCAGTGCCTTCCCAAATGTTTGGTGTGGTTCCAACTGGCAACAGTGCCTTCATTTCAGTGCCTGGGAATGATTTTAAT ACAAATAAAGGTATGCTGTCAGAAACTTCAAGTGGATTATTGCAGCCTGGAATTTCTCCAGCCGTAGGCTCCAGCTCTGACTCTCGTACATTTGGCAATG TGGGGTTTGGTGGCAAATCATCTTGGCAGGGATTTTTACCATATCAGCAACAAGGTACTGTTCCATTTCCACCAGATCTGAATGTTGGATTCTTGGCACC TGGTTCACCTACTTCGAGTGTGCCCATCGGTTCACCACGGCAGCCAGATTTAGCATTGCAGCTCTGA
AA sequence Show only first row Show all	>Potri.002G009100.1 pacid=42778860 polypeptide=Potri.002G009100.1.p locus=Potri.002G009100 ID=Potri.002G009100.1.v4.1 annot-version=v4.1 MGEEADPTMKKKKKKGRPSLLELQKRSLKQQQLQQTTPISLKNPNPLNSNSALPNRRSARRSSNSYAPEWIDGDDDEDDERKEKKHKLLRGLNSQKNNNQ NSNSSSPSNLHGSDSNAGGGNQEDGIRRRKISAVRLGSDDLGEKVLKGTDTIHGSSVEPGPTTPLPDKKLLVFILDRLQKKDTYGVFSEPVDPEELPDYF DIVENPMDFSTVRKKLDEGAYAHLEQFEKDVLLICSNAMQYNPSDTIYFRQARAMQELAKKDFENLRQDSDDSEPQTKVARRGRPPALGKLKKALERSPI DRVGPEASSDATLATGGDHNNLSNGYNLRKSSSYKYQPGDAFVRASYSSENYSTWLSEWENEFPASVVKAVMKYGKKPFVLDENKRDTYKHPLGSHEPSI LSTFEGELKQLVVVGLSSEHGYARSLARFAADLGPVVWRIASKKIESVLPTGLEFGPGWVGENKAMEKQKILNNLVSDNHLSRFQPAASSSREAAWNREG LPETVGGLNPQNELATLNSGAGGMKSMPSLQIQQKPIIHPDMNGFSGGFGYNSSPQPGMARTVAPTGKLNLEQTAVPSQMFGVVPTGNSAFISVPGNDFN TNKGMLSETSSGLLQPGISPAVGSSSDSRTFGNVGFGGKSSWQGFLPYQQQGTVPFPPDLNVGFLAPGSPTSSVPIGSPRQPDLALQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20670			DNA-binding bromodomain-contai...		Potri.002G009100 [exp]	0	1	BRD901
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Potri.005G134900 [exp]	10.90	0.7686	LBD36.2
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155300 [exp]	12.00	0.7252
AT2G28390			SAND family protein (.1)		Potri.009G014400 [exp]	14.24	0.6996
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Potri.011G166900 [exp]	21.00	0.6393
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	22.49	0.7041
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	23.21	0.6812
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.011G120300 [exp]	29.69	0.7121
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G034000 [exp]	30.00	0.7456
AT5G24320			Transducin/WD40 repeat-like su...		Potri.001G086600 [exp]	35.32	0.6661
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	35.51	0.7196

Compare expression of checked genes

Potri.002G009100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.