Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20650 549 / 0 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G76370 504 / 7e-180 Protein kinase superfamily protein (.1) AT5G18610 472 / 4e-165 Protein kinase superfamily protein (.1.2) AT5G02800 452 / 3e-159 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 446 / 9e-156 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G07070 437 / 6e-153 Protein kinase superfamily protein (.1) AT3G24790 435 / 8e-153 Protein kinase superfamily protein (.1) AT3G20530 421 / 5e-147 Protein kinase superfamily protein (.1) AT1G07870 414 / 1e-143 Protein kinase superfamily protein (.1.2) AT4G13190 413 / 1e-143 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252000 [exp] 668 / 0 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 472 / 3e-167 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 476 / 7e-167 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 469 / 8e-164 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 460 / 1e-162 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 456 / 3e-160 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 453 / 2e-158 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 446 / 8e-156 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 432 / 2e-151 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030741 [exp] 543 / 0 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10016021 [exp] 532 / 0 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012249 [exp] 506 / 4e-167 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012814 [exp] 473 / 1e-165 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 473 / 1e-165 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 456 / 2e-160 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 455 / 3e-160 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 455 / 4e-160 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 454 / 1e-158 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10036499 [exp] 445 / 5e-156 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G009300.1 pacid=42778857 polypeptide=Potri.002G009300.1.p locus=Potri.002G009300 ID=Potri.002G009300.1.v4.1 annot-version=v4.1 ATGAGCTGCTTTTCTTGCATAAACCCACATCGAAAAGATATTAAGATCGACATTGAACACGCCCCAAGATCTAGTTCTCGATATTCATCTGGGTATACAG GGGATGCAGACAATGGGAAGGGTCAGGGTGCTGAGGAAGGGGCTCGTAGTTTCACATTTCGTGAGCTTGCAGCAGCAACAAGAAATTTTAGAGAGATTAA TTTGATTGGTGAAGGAGGTTTTGGCAGGGTTTATAAAGGCAGGTTAGAAACAGGAGAGATTGTCGCGGTGAAACAACTTAATCAGGATGGTCTTCAGGGG CATCAAGAATTTATCGTGGAGGTTCTTATGCTGAGTCTGTTACACCATTCCAATCTTGTTACCTTGATTGGCTACTGTACTTCTGGTGATCAGAGGCTAT TGGTTTATGAGTACATGCCGATGGGTAGTTTGGAAGATCATCTTTTTGATCTAGAACCCGATAAAGAGCCATTAAGTTGGAGCACTCGGATGAAGATTGC TGTTGGTGCTGCTCGGGGACTCGAGTACCTACACTGTAAAGCAGACCCGCCTGTTATTTATCGCGACCTGAAATCTGCAAATATCTTGCTGGACAATGAT TTTAATCCAAAACTATCAGATTTTGGACTTGCAAAATTGGGACCTGTTGGTGAAAATACACATGTTTCAACCAGAGTTATGGGGACATATGGTTACTGTG CCCCAGAGTATGCCATGAGTGGCAAGTTGACTGTTAAATCAGATATTTACAGTTTTGGTGTTGTTTTGTTGGAGTTAATTACTGGGAGAAAGGCTATAGA TCGTTCAAAGAAGCCAGGGGAGCAGAACTTAGTTGCTTGGTCGCGCGCGTTTTTGAAAGAGCAAAAGAAATATTGTCAGTTGGCTGATCCTCTGTTGGAA GGGTGTTATCCTCGTCGTTGTTTGAACTATGCGATTGCTATAACTGCAATGTGCCTCAATGAGGAAGCCAACTTTCGCCCTCTTATTAGTGATATACTTG TTGCCCTAGAATATTTGGCTTCACAGTCCCGTGTCCCAGAATCCAGTACTGGTCGAGTACGAGGTACCAATCCATCATTGCCATATTCTGACAGGAAAGC CGTTTCTCGAGAACCAGATTCTAGGAGTAGAGCTTCCATTTAA
AA sequence Show only first row Show all	>Potri.002G009300.1 pacid=42778857 polypeptide=Potri.002G009300.1.p locus=Potri.002G009300 ID=Potri.002G009300.1.v4.1 annot-version=v4.1 MSCFSCINPHRKDIKIDIEHAPRSSSRYSSGYTGDADNGKGQGAEEGARSFTFRELAAATRNFREINLIGEGGFGRVYKGRLETGEIVAVKQLNQDGLQG HQEFIVEVLMLSLLHHSNLVTLIGYCTSGDQRLLVYEYMPMGSLEDHLFDLEPDKEPLSWSTRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDND FNPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMSGKLTVKSDIYSFGVVLLELITGRKAIDRSKKPGEQNLVAWSRAFLKEQKKYCQLADPLLE GCYPRRCLNYAIAITAMCLNEEANFRPLISDILVALEYLASQSRVPESSTGRVRGTNPSLPYSDRKAVSREPDSRSRASI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.002G009300 [exp]	0	1
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	4.58	0.8590
AT4G14740			Plant protein of unknown funct...		Potri.010G082400 [exp]	5.09	0.8174
AT3G14470			NB-ARC domain-containing disea...		Potri.008G212200 [exp]	5.19	0.8232	FRGA-A30.20
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	6.70	0.8333	Pt-TAN1.2
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	8.36	0.8260
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	8.71	0.8441
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G155700 [exp]	9.16	0.8171
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G063300 [exp]	11.31	0.7700
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	12.12	0.8363
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.012G142700 [exp]	14.28	0.7814

Compare expression of checked genes

Potri.002G009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.