Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) AT2G17220 429 / 2e-148 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT2G28930 405 / 8e-139 APK1B protein kinase 1B (.1.2.3) AT1G07570 403 / 4e-138 APK1A Protein kinase superfamily protein (.1.2.3) AT4G35600 397 / 8e-136 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G02290 396 / 1e-135 NAK Protein kinase superfamily protein (.1.2) AT3G01300 382 / 1e-128 Protein kinase superfamily protein (.1) AT5G15080 379 / 2e-127 Protein kinase superfamily protein (.1) AT2G02800 374 / 1e-126 Kin2, APK2B protein kinase 2B (.1.2) AT2G39660 370 / 2e-125 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251900 [exp] 630 / 0 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.007G062700 [exp] 464 / 1e-161 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 453 / 3e-157 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 448 / 1e-155 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 447 / 5e-155 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G031300 [exp] 399 / 9e-137 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 398 / 3e-136 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 397 / 1e-135 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 386 / 3e-131 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012256 [exp] 488 / 2e-171 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 483 / 2e-169 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10030743 [exp] 462 / 5e-161 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1) Lus10024512 [exp] 446 / 2e-154 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 429 / 8e-148 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 427 / 3e-147 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 422 / 3e-145 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 428 / 1e-139 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10023794 [exp] 405 / 1e-139 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 405 / 3e-139 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G009400.1 pacid=42778442 polypeptide=Potri.002G009400.1.p locus=Potri.002G009400 ID=Potri.002G009400.1.v4.1 annot-version=v4.1 ATGTTACTTCTTGACCCTTTCTTCTGCCTTTCGAGGAACCAACGCAACCAGTTTATCATTTCATATCCAAGGCCGGCAGGCCGGCCACAGCACAGCTCCA ATCCAGAGACGATATCAAAAATCTCTATCCGCATGGGAAATTGTTGGGGAACTACTCCTGTCACTAACCATAATAGCCCCACGCCTACAAAGCCTTCTAC TCCAGAAACAACACGGAACCACAGCAAAGAAAATGGACTGGGGAGCAGAAGCAGCAGCCAATGTAAGGCAAAAGAAGATGACAAGTTTGGTATGGGTATG GAAAAGAAGGGAAAGGATGAAATAGCAATGATTTCTGCAGCTGCAAGTGGACAGATTATATTGGCACCAAAGCTGTTCACTCTAGCAGAGTTGAAAAGTG CTACTAGGAATTTTAAACCTAATACTGTGCTCGGGGAAGGTGGATTCGGCAGAGTTTTTAAGGGTTGGGTCGATGAGAAGACTTATGCACCAGCTAAAGT TGGTACAGGCATGGCTGTAGCAGTCAAGAAATCCAGCCCAGAGAGCTCTCAAGGCCTAGAGGAGTGGCAGTCTGAGGTGGAGTTCTTGGGAAAATTGTCT CATCCAAACCTTGTCAAACTCTTGGGTTACTGCTGGGAGGATGAACATTTCCTCCTTGTCTACGAATACATGCAGAAGGGGAGCTTGGAAAAGCACCTTT TCAGAAAGGGTGCAGAACCACTTGCATGGGACATTAGGCTTAAAATAGCCATCGGAGCTGCTCAAGGTCTTGCCTTCCTCCACACTTCTGACAAGAGTGT CATCTATCGAGACTTCAAGACATCTAATATATTATTGGATGGGGCCTACAACGCAAAACTTTCTGACTTTGGGCTGGCGAAATTAGGTCCATTAAATGGC GACTCCCATGTCACAACAAGGATCATGGGCACATATGGTTATGCAGCTCCTGAATACCTTGCCACTGGTCATTTGTATGTCAAGAGTGATGTGTACGGGT TTGGTGTTGTGCTCCTAGAATTGCTGACGGGCCTAAAGGCCCTCGACACCAATCGGCCGAGTGGACAGCACAATCTGGTAGAGTATGCCAGGCCTTTTCT CTTAGAGAGAAGAAAGCTCAAGAAAATAATGGATCCGGGTCTTGAAGAGCGGTACCCTTTAAAAGCTGCAATGCAAGCAGCTGAACTGATACTGCGTTGT TTGGAATCTGACCTGAGAATTCGACCATCCATGGAAGAAGTTTCGGGGATCTTAATAAAGATAAAGGATGTGAAGGAGAAGCCCAAGAAGAGCAAAAGTA GTTGTTCCGATGGAAGTTATGCAAGGAGACAGGAAGAACGTTCCCGTCATCAATCTCCACTTCAGCCCAGACATGGTGGCACTGGTTACAAGGTTCGAGC CTTCTCCTCAGCTTAG
AA sequence Show only first row Show all	>Potri.002G009400.1 pacid=42778442 polypeptide=Potri.002G009400.1.p locus=Potri.002G009400 ID=Potri.002G009400.1.v4.1 annot-version=v4.1 MLLLDPFFCLSRNQRNQFIISYPRPAGRPQHSSNPETISKISIRMGNCWGTTPVTNHNSPTPTKPSTPETTRNHSKENGLGSRSSSQCKAKEDDKFGMGM EKKGKDEIAMISAAASGQIILAPKLFTLAELKSATRNFKPNTVLGEGGFGRVFKGWVDEKTYAPAKVGTGMAVAVKKSSPESSQGLEEWQSEVEFLGKLS HPNLVKLLGYCWEDEHFLLVYEYMQKGSLEKHLFRKGAEPLAWDIRLKIAIGAAQGLAFLHTSDKSVIYRDFKTSNILLDGAYNAKLSDFGLAKLGPLNG DSHVTTRIMGTYGYAAPEYLATGHLYVKSDVYGFGVVLLELLTGLKALDTNRPSGQHNLVEYARPFLLERRKLKKIMDPGLEERYPLKAAMQAAELILRC LESDLRIRPSMEEVSGILIKIKDVKEKPKKSKSSCSDGSYARRQEERSRHQSPLQPRHGGTGYKVRAFSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76360			Protein kinase superfamily pro...		Potri.002G009400 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268900 [exp]	2.82	0.9663
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	4.35	0.9704
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.003G169100 [exp]	4.89	0.9571
AT1G47670			Transmembrane amino acid trans...		Potri.009G140800 [exp]	6.92	0.9474
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	7.54	0.9639
					Potri.002G247600 [exp]	8.36	0.9583
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	8.36	0.9621
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.005G205400 [exp]	10.00	0.9553
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	10.67	0.9586
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	11.66	0.9636

Compare expression of checked genes

Potri.002G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.