Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38350 1724 / 0 Patched family protein (.1.2) AT1G42470 1675 / 0 Patched family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251800 [exp] 2300 / 0 AT4G38350 1738 / 0.0 Patched family protein (.1.2) Potri.009G167000 [exp] 1785 / 0 AT4G38350 1679 / 0.0 Patched family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016019 [exp] 1876 / 0 AT4G38350 1711 / 0.0 Patched family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0322 [poplar] [flax] RND_permease PF02460 [poplar] [flax] Patched Patched family CL0644 [poplar] [flax] Fz PF16414 [poplar] [flax] NPC1_N Niemann-Pick C1 N terminus
Representative CDS sequence Show only first row Show all	>Potri.002G009600.2 pacid=42779852 polypeptide=Potri.002G009600.2.p locus=Potri.002G009600 ID=Potri.002G009600.2.v4.1 annot-version=v4.1 ATGGAGCTCTCAAGCAGGACGATGAAGCTTTTTCTGCTTTCGATTTTTCTATTACAGGTGTTTTATGCAGTATCTATAGTCAGCGCGGAGAGGTCTGATG CACGGTCGCTTAAGACACGAAATGCAGTATCAGGGGAGAGACATTCAGAGGAATATTGTGCAATGTATGATATTTGTGGTGCACGTGAAGATGGGAAAGT CGTGAACTGTCCTTTTGGCTCCCCATCTGTGAAGCCAGATGACTTGCTTTCACAAAAGATTCAAAGCTTATGCCCTACAATTACTGGCAATGTTTGTTGT TCAGAAGCTCAGTTTGAAACTTTACGGTCACAAGTCCAGCAAGCAATTCCATTTCTGGTCGGCTGTCCTGCATGTTTGAGAAACTTTTTGAATTTGTTCT GTGAGCTTACCTGTTCCCCGCATCAGAGCATGTTTATTAACGTGACTTCTACGGATAAGGTTGAAGGCAATTTGACCGTGAGTGGCATTGATTTTTATGT ATATGATTCTTTTGGTGAAGGGTTGTATGAATCTTGCAAGGATGTAAAGTTTGGGACCATGAATAGCCGGGCTCTAAATTTTATTGGTGCTGGTGCTAAA AATTTCACAGAGTGGTATGCATTTATTGGTAGACGAGCACCCCTTAATGTGCCGGGCTCACCATATGCTATGACATTCAAGCCTTCTGCTCCTGAGTCAT CTGGAATGAAACCCATGAATGTTTCTACATATTCATGTGGTGATATTTCACTGGGTTGTTCTTGTGGTGATTGTCCTCAATCTCCTGTTTGTGCAAATAC TGATCCTCCTCCACATCACGAGGGGGCTTCTTGTGCAGTGAGAATTGGATCTCTCAAGGCCAAATGCGTCGACTTTATTCTAACAATCCTCTATGTTATA TTGGTTTCCATCTTTTTGGGATGGGGCTTGTTTCATCGAAAAAGAGAAAGGGACCAGAGTTCTAGAATGAATCCAGTGTCGAATATCAAGGACAGTGGTG AAGTTACTGGGAAGAAGGATGAGAACCTTCCCATGCAGATGCTTGAAGATTCTCCTCAAACCGGAAGCAGGGTTCAGCTTTCAATTGTTCAAGGATACAT GTCGAAGTTCTACAGGTGTTATGGAACATGGGTTGCTAGAAACCCAATCCTTGTGTTGAGCTTGTCGTTGGCTGTAATTCTTTTACTTTGTCTAGGTCTC ATCCGTTTCAAGGTGGAGACACGGCCTGAGAAGCTATGGGTAGGGCCTGGGAGTAAAGTTGCGGAAGAGAAAAGGTTTTTTGACACCCACCTAGCCCCTT TTTACAGAATTGAGCAGCTAATTCTAGCGACTGTTCCAGAAGCTGGGGCACAGAAAAGACCAAGTATTGTGACAGAAAACAACATCAAATTACTTTTTGA AATACAAAAAAAGGTTGATGGAATCCATGCAAATTATTCTGGAACAATGGTATCTCTGCCTGATATTTGCTTGAAGCCACTGGACAAAGATTGTGCCACT CAGAGTGTACTGCAGTATTTCCAAATGGATCCTCAAAATCTCGATAATTATGGAGGAGTTGAGCACGTGAACTATTGTCTCCAGCATTATTCCTCTGCAG ACACATGTCGGAGTGCCTTCAAAGCTCCCCTTGATCCAAGCACAGCCTTGGGAGGTTTCTCTGGGAACAATTATTCGGAGGCATCTGCATTTATTGTAAC TTATCCAGTAAACAATGTGATTGATAAAGAAGGGAATGAAACTGATAAGGCGGTTGCTTGGGAGAAGGCTTTTATTCAGTTAGTGAAGAATGAATTATTG CCAATGGTGCAATCTAAGAATCTCACACTTTCTTTTTCTTCGGAAAGCTCCATTGAGGAGGAACTAAAAAGGGAAAGCACTGCTGATGTCATAACTATAT TGATTAGCTATCTTGTGATGTTTGCCTACATATCTCTTACTCTGGGTGACACTCCTCATTTATCTTCGTTTTACATTTCATCTAAGGTATTGCTTGGTCT TTCTGGAGTTTTGCTTGTCATGTTGTCTGTTCTTGGATCTGTTGGATTTTTTAGTGCCATTGGAGTGAAGTCTACACTAATCATCATGGAAGTCATTCCT TTTCTTGTATTAGCTGTTGGGGTGGATAACATGTGCATATTGGTGCATGCTGTCAAGAGGCAACCAATGGAGTTGCCGCTAGAGGGACGGATAAGCAATG CTCTTGTGGAAGTTGGACCATCCATCACACTTGCTAGTCTATCTGAGGTTTTAGCATTTGCAGTTGGAAGTTTCATTCCTATGCCAGCATGTCGTGTGTT CTCTATGTTCGCTGCACTTGCTGTTCTTTTGGACTTTCTTCTGCAAGTTACTGCTTTTGTAGCTTTCATAGTTTTTGATTTTTTGCGAGCTGAGGATAAG AGAATTGATTGCATTCCATGTCAGAAAATTTCATCTTCATCTGCAGACTCTGATAAAGGAATTGGTGGGAGAAGACCTGGATTGCTGGCTCGCTATATGA AGGAGATCCACGCACCCATACTCAGTCTTTGGGGAGTTAAGATAGTAGTCATTGCCATCTTTGCTGCTTTCACATTGTCCAGCATAGCATTATCCACTCG AGTTCAACCTGGTTTAGAACAAAAAATTGTACTTCCACGGGACTCGTATCTTCAGGGCTATTTTAATAATGTCTCAGAGTATCTCAGAATTGGTCCACCA CTATATTTTGTAGTTAAGAACTACAACTATAGCTCAGAATCAAGTCAGACAAATCAGCTGTGCTCCATCAGCCAATGTGATTCAAACTCTCTTTTAAATG AGATTGCAAGAGCATCCTTAACACCAGAATCTAGCTATATAGCTATGCCAGCTGCTTCATGGCTTGATGATTTTCTTGTATGGATATCTCCAGAAGCTTT CGGCTGCTGTAGGAAGTTCACAAATGGGACTTATTGCCCCCCTGATGATCAGTCTCCTTGTTGTTCATCTGATACAGGTTCATGTGGTCTTGGTGGGATA TGCAAAGATTGTACTACTTGCTTCCGTCACTCAGATTTGAATAGTGATCGTCCATCTACATCTCAGTTCAAGGAGAAACTCCCATGGTTTCTCAATGCTT TGCCCTCTGCTGACTGTGCCAAAGGTGGCCATGGTGCTTACACTAGCAGTATAGATCTACAAGGCTATGAGAATGGTGTTATTCAAGCATCATCCTTCCG CACGTATCATACACCTCTTAACAAGCAGATTGACTATGTCAATTCAATGAGGGCTGCTCGAGAGTTCAGTTCAAGGGCTTCTGATTCTTTGAAGATGGAG ATCTTCCCATACTCTGTATTTTATATGTTTTTTGAACAATACCTTGATATATGGAGGACTGCATTGATCAACCTAGCCATAGCAATTGGAGCGGTATTTG TTGTTTGCTTGGTCATCACTTGCAGTTTATGGAGTTCTGCTATCATTTTGCTGGTGTTGGCAATGATAGTCGTGGATCTCATGGGCGTGATGGCAATTCT GAACATTCAACTGAATGCAGTCTCTGTTGTCAACCTTGTCATGTCAGTGGGCATTGGTGTTGAGTTCTGCGTACATTTAACACATGCTTTCTCGGTGAGT AGTGGCGACAAAGACCAAAGAGTCAGGGATGCTCTGGGTACAATGGGAGCTTCTGTCTTCAGTGGCATCACATTAACAAAACTAGTTGGCGTGATTGTTC TTTGCTTCTCAAGAACAGAAGTTTTTGTGGTTTATTACTTCCAAATGTACCTTGCACTGGTCCTCCTTGGTTTCTTACATGGGCTGGTGTTCTTACCGGT TGTGTTGAGCATGTTTGGCCCACCTTCAAGGTGTAAACTTGTCGAGAAGCAAGAAGACCGGCCATCGGTTTCCTTGCGGCCTTGA
AA sequence Show only first row Show all	>Potri.002G009600.2 pacid=42779852 polypeptide=Potri.002G009600.2.p locus=Potri.002G009600 ID=Potri.002G009600.2.v4.1 annot-version=v4.1 MELSSRTMKLFLLSIFLLQVFYAVSIVSAERSDARSLKTRNAVSGERHSEEYCAMYDICGAREDGKVVNCPFGSPSVKPDDLLSQKIQSLCPTITGNVCC SEAQFETLRSQVQQAIPFLVGCPACLRNFLNLFCELTCSPHQSMFINVTSTDKVEGNLTVSGIDFYVYDSFGEGLYESCKDVKFGTMNSRALNFIGAGAK NFTEWYAFIGRRAPLNVPGSPYAMTFKPSAPESSGMKPMNVSTYSCGDISLGCSCGDCPQSPVCANTDPPPHHEGASCAVRIGSLKAKCVDFILTILYVI LVSIFLGWGLFHRKRERDQSSRMNPVSNIKDSGEVTGKKDENLPMQMLEDSPQTGSRVQLSIVQGYMSKFYRCYGTWVARNPILVLSLSLAVILLLCLGL IRFKVETRPEKLWVGPGSKVAEEKRFFDTHLAPFYRIEQLILATVPEAGAQKRPSIVTENNIKLLFEIQKKVDGIHANYSGTMVSLPDICLKPLDKDCAT QSVLQYFQMDPQNLDNYGGVEHVNYCLQHYSSADTCRSAFKAPLDPSTALGGFSGNNYSEASAFIVTYPVNNVIDKEGNETDKAVAWEKAFIQLVKNELL PMVQSKNLTLSFSSESSIEEELKRESTADVITILISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVLLVMLSVLGSVGFFSAIGVKSTLIIMEVIP FLVLAVGVDNMCILVHAVKRQPMELPLEGRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVAFIVFDFLRAEDK RIDCIPCQKISSSSADSDKGIGGRRPGLLARYMKEIHAPILSLWGVKIVVIAIFAAFTLSSIALSTRVQPGLEQKIVLPRDSYLQGYFNNVSEYLRIGPP LYFVVKNYNYSSESSQTNQLCSISQCDSNSLLNEIARASLTPESSYIAMPAASWLDDFLVWISPEAFGCCRKFTNGTYCPPDDQSPCCSSDTGSCGLGGI CKDCTTCFRHSDLNSDRPSTSQFKEKLPWFLNALPSADCAKGGHGAYTSSIDLQGYENGVIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRASDSLKME IFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFVVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNAVSVVNLVMSVGIGVEFCVHLTHAFSVS SGDKDQRVRDALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSMFGPPSRCKLVEKQEDRPSVSLRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38350			Patched family protein (.1.2)		Potri.002G009600 [exp]	0	1
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	7.00	0.8623
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.017G130600 [exp]	14.35	0.8596
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	25.33	0.8477	TUB17,TUB6.1
AT1G34350			unknown protein		Potri.019G085500 [exp]	28.01	0.8396
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.007G107200 [exp]	28.14	0.8387
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.009G061500 [exp]	29.81	0.8376
AT2G26600			Glycosyl hydrolase superfamily...		Potri.018G129500 [exp]	35.88	0.7924
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	49.30	0.8321
AT3G03430			Calcium-binding EF-hand family...		Potri.017G126400 [exp]	49.81	0.7719
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	52.00	0.8265

Compare expression of checked genes

Potri.002G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.