Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20640 823 / 0 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G35270 738 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT1G76350 725 / 0 NLP5 Plant regulator RWP-RK family protein (.1) AT2G17150 694 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G64530 466 / 6e-151 NLP6 Plant regulator RWP-RK family protein (.1) AT3G59580 397 / 7e-124 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 390 / 8e-121 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G24020 350 / 8e-106 NLP7 NIN like protein 7 (.1) AT4G38340 279 / 3e-81 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35590 53 / 7e-07 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251700 [exp] 1438 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 780 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 763 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 658 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 652 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 640 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 486 / 1e-156 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 485 / 4e-156 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 429 / 3e-135 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012257 [exp] 927 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 925 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 560 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 550 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 464 / 8e-152 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 451 / 2e-143 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10013224 [exp] 430 / 1e-138 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 418 / 2e-131 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 416 / 2e-130 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 404 / 2e-127 AT4G24020 783 / 0.0 NIN like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.002G009700.14 pacid=42779385 polypeptide=Potri.002G009700.14.p locus=Potri.002G009700 ID=Potri.002G009700.14.v4.1 annot-version=v4.1 ATGGAAGATGGTGGTTTATCACCGGGTACGATGCTGGGCGCAACGGTTGATTCAGTCTCAGTTATGGATTTCGACTACATGGATGAATTGTTGTTAGAAG GATGCTGGTTAGAAACAACAGATGGATCTGAGTTTCTTAATCCTAGTCTGTCCAATTCTGCTGCCTTTTTTGATTCTTCATTTATGTGGCCCACTCCAGA GATTAACCATGGTGATTCAGCCTCTAGTCCATCCCAAAAGGGCAATCAAGAAGATAACCAGATATCAATGTTTCCAGGGAATTCTACTCTGAGTGATATC CAAGCCAGAAGTCCTGCTGGTGAGACTGCGGTTTCTGTAGCTGGATGGGATGACAATGCAACTGATGGCTCTGAACTTGGAAAAAGATGGTGGATAGGAC CCACTCCGAATCCAAGTGTTGAAACTTCTGTGAAGAGGAGATTAATTAAGGCATTGGAGTGCATTAAAGACTTAACGAAAAATAAAGATGTCCTTATACA AATATGGGTCCCTGTTAATAGAGGAGGTAGACGTGTTCTTACAACCCATGATCAACCTTTTTCACTTGATCCCAGCAGTGAGAAACTGGCGAGTTACAGA GACATATCCGTTAAATATCAATTTTCTGCCGAGGAGGATTCCAAGGACTCAGTTGGCTTGCCTGGTCGGGTTTTCTTGGGTAAAGTTCCTGAGTGGACTC CTGATGTTCGATTCTTTAGAAGTGATGAATACCCACGAGTGAATCACGCTCAGCTGTATGATGTACGTGGAACTCTTGCCCTTCCTGTTTTTGAACAAGG TAGCCGGACTTGCTTGGGTGTTATTGAGGTGGTGACCACTTCACAAAAGATCAAGTACCGTCCCGAGCTTGAAAGTGTTTGCAAGGCTCTTGAGACTGTT GATCTTAGGAGTTCTGAAGTTCCAAGCATACAGAACTTACAGGCATGTAATATGTCCTACCAAGCTGCATTACCTGAGATTCAAAAGCTTCTGAGAGCTG CGTGTGAGACACACAGATTGCCCTTAGCTCAAACTTGGGTCCCATGTACCCAACAAGGCAAGGGAGGTTGCCGGCATTCCAACGAGAATTACTATCGATG TGTTTCTACTGTGGATGATGCTTGCTGTGTAGCTGATTCTGCTATCCAGGGTTTTCAAGAGGCGTGCTCAGAGCATCACTTGCTAAAGGGTCAAGGAGTT GCTGGGCAAGCCTTTATGACCAACCAACCCTGCTTCTCAGGTGATGTAACTTCATATGGCAAGACTGAGTATCCTCTTTCTCACCATGCAAGGATGTTTG GACTGTGTGCTGCTGTTGCAATTCGCTTGCGAAGCATTTACATTGGTACAACAGACTTTGTCCTGGAGTTCTTCCTGCCTGTCAATTGCAGGGATCCTCA AGAGCAGAAGAAGATGCTTAATTCACTGTCTGCCATTATACAGCATGTTAGCCAGACCTTACGGGTAGTAACAGACAAAGAACTAGTGGAGGAAACTGAT TTGCCATTTAGTGAAGTGTTAGTACCTTCAGATGGTAGATCTAGTGGAGAAGAGACATCAACAGTTAAACAGTCTTGTTCAGAAAGGCATAGTAGAGATA ATTCACCCTGGACTGCCTGTCTCTCAGAGGTCCAACCAAGTGGAAGTAACATCTCTTTATCTCAAAAAGACAAACAAAAGGTAATGTTGCGTGAAAAATC CAGTGAGAACAGGGAAAATCAAGAAGATTGTAGCCTTAGAGAGAGTATTAAATGTGGCAGAGATTCTACTTCTGCTGAAGGTAGCTTTTCAAGTGCTGGC ACATCTAAAACAGGAGAAAAAAGACGTGCCAAAGCAGAAAAAACAATCACCTTGCAAGTTCTACGGCAATATTTTGCTGGCAGCTTAAAGGATGCTGCGA AGAGTATTGGTGTTTGCCCCACTACGTTGAAAAGAATATGCAGGCAACATGGAATTAACCGCTGGCCTTCTCGGAAAATCAAGAAGGTTGGTCATTCCTT AAAGAAACTCCAACGTGTTATCGACTCAGTTGAAGGTGCCTCTGGCACTGTTCAGATTGATTCCTTTTATAAAAATTTCCCTGAGCTTGCCTCGCCAACT TTGTCCAGAACTAGTCCACTATCAACTTTAAAGTCAAGCAGTCATCCGAAACCATCAGGCATGCAGCCTGAAGGAGGTACTTTCAGCTCCCAAGTTACTG CACCAAAATCACCTTCACCCTCATGTAGTCTGGGTTCCAGTTCAAGCCATAGCTGTTCCAGTGGGGCAATTGCTGCTAGTGAAGATCCTGTGTCTGGAGA AAACTCAGGCAATGGTGTTTTGAAGATGGTCCGAAGCAATGTGGAGCTCCATGCATCAAGTCCAGGAGAACAGGAGAGAATGCCAAGATCCCAGAGTCAT AAAACTCTTGCGGAACTGGGGAGCATTCCGCCCTTATCTAAAGATGGCAGCCGGTTATCTCAAGAAACGGATGCTCACAGATTGAAAGTCACGTATGGAA ATGAGATAATTCGGCTCCGCATGTCAAACAAATGGGGATTCAAAGATCTATTGCAAGAGATCGTCAGACGGTTTAACATAGATGACATACATAGATTTGA TCTGAAGTACTTGGATGATGATTCTGAGTGGGTCTTATTGACATGTGATGATGATTTGGAGGAGTGTATTGCTATATGCGGTTCATCTGATAACCAGACA ATTAAACTCTTGCTCGAAGTTTCTCCTCGTCCTTTAGGGAGGTCTTCGCACAGCAGTGGGCTGTCTTGA
AA sequence Show only first row Show all	>Potri.002G009700.14 pacid=42779385 polypeptide=Potri.002G009700.14.p locus=Potri.002G009700 ID=Potri.002G009700.14.v4.1 annot-version=v4.1 MEDGGLSPGTMLGATVDSVSVMDFDYMDELLLEGCWLETTDGSEFLNPSLSNSAAFFDSSFMWPTPEINHGDSASSPSQKGNQEDNQISMFPGNSTLSDI QARSPAGETAVSVAGWDDNATDGSELGKRWWIGPTPNPSVETSVKRRLIKALECIKDLTKNKDVLIQIWVPVNRGGRRVLTTHDQPFSLDPSSEKLASYR DISVKYQFSAEEDSKDSVGLPGRVFLGKVPEWTPDVRFFRSDEYPRVNHAQLYDVRGTLALPVFEQGSRTCLGVIEVVTTSQKIKYRPELESVCKALETV DLRSSEVPSIQNLQACNMSYQAALPEIQKLLRAACETHRLPLAQTWVPCTQQGKGGCRHSNENYYRCVSTVDDACCVADSAIQGFQEACSEHHLLKGQGV AGQAFMTNQPCFSGDVTSYGKTEYPLSHHARMFGLCAAVAIRLRSIYIGTTDFVLEFFLPVNCRDPQEQKKMLNSLSAIIQHVSQTLRVVTDKELVEETD LPFSEVLVPSDGRSSGEETSTVKQSCSERHSRDNSPWTACLSEVQPSGSNISLSQKDKQKVMLREKSSENRENQEDCSLRESIKCGRDSTSAEGSFSSAG TSKTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQRVIDSVEGASGTVQIDSFYKNFPELASPT LSRTSPLSTLKSSSHPKPSGMQPEGGTFSSQVTAPKSPSPSCSLGSSSSHSCSSGAIAASEDPVSGENSGNGVLKMVRSNVELHASSPGEQERMPRSQSH KTLAELGSIPPLSKDGSRLSQETDAHRLKVTYGNEIIRLRMSNKWGFKDLLQEIVRRFNIDDIHRFDLKYLDDDSEWVLLTCDDDLEECIAICGSSDNQT IKLLLEVSPRPLGRSSHSSGLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Potri.002G009700 [exp]	0	1
AT5G42610			Protein of unknown function (D...		Potri.014G041000 [exp]	2.44	0.8296
AT2G31945			unknown protein		Potri.001G230900 [exp]	9.48	0.7971
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Potri.001G219900 [exp]	14.49	0.7191
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	17.14	0.7529
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.002G177500 [exp]	26.73	0.7756
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025350 [exp]	43.87	0.7095
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.001G417000 [exp]	47.81	0.7011
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	68.93	0.7451
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	123.36	0.7211
AT1G28710			Nucleotide-diphospho-sugar tra...		Potri.002G139800 [exp]	143.89	0.7073

Compare expression of checked genes

Potri.002G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.