Plant FIBer expression Database

CAT1,Pt-CAT1.4 (Potri.002G009800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CAT1,Pt-CAT1.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35090 961 / 0 CAT2 catalase 2 (.1.2)
AT1G20630 927 / 0 CAT1 catalase 1 (.1)
AT1G20620 832 / 0 SEN2, CAT3, ATCAT3 SENESCENCE 2, catalase 3 (.1.2.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G251600
[exp]
982 / 0 AT4G35090 944 / 0.0 catalase 2 (.1.2)
Potri.005G100400
[exp]
950 / 0 AT4G35090 958 / 0.0 catalase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030745
[exp]
980 / 0 AT4G35090 947 / 0.0 catalase 2 (.1.2)
Lus10012258
[exp]
976 / 0 AT4G35090 945 / 0.0 catalase 2 (.1.2)
Lus10013225
[exp]
976 / 0 AT4G35090 942 / 0.0 catalase 2 (.1.2)
Lus10016017
[exp]
843 / 0 AT4G35090 822 / 0.0 catalase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00199 Catalase Catalase
PF06628 Catalase-rel Catalase-related immune-responsive
Representative CDS sequence
>Potri.002G009800.5 pacid=42779501 polypeptide=Potri.002G009800.5.p locus=Potri.002G009800 ID=Potri.002G009800.5.v4.1 annot-version=v4.1
ATGGATCCCTACAAGTACCGTCCATCAAGCGCTTTCGGTACTCCATACTGGACTACAAATTCTGGAGCTCCGGTTTGGAACAACAACTCGTCTTTGACCG
TTGGATCTAGAGGTCCAATCCTCCTTGAGGATTACCATCTGGTGGAGAAGCTTGCCAATTTTGACAGGGAGAGGATTCCAGAGCGTGTTGTCCATGCTAG
GGGAGCCAGTGCAAAGGGTTTCTTTGAGGTTACCCATGATATCTCTGGCCTCACATGTGCTGATTTTCTCCGGGCTCCTGGAGTTCAGACACCTGTCATT
GTCCGCTTCTCCACAGTTATCCATGAGCGTGGCAGCCCTGAAACCCTGAGGGATCCACGTGGATTTGCAGTGAAGTTTTACACCAGAGAGGGTAACTTTG
ATCTCGTGGGAAACAATTTCCCTGTCTTCTTCATCCGTGATGGAATGAAATTCCCAGACATGGTGCATGCCCTTAAGCCCAACCCTAAGTCTCATATTCA
GGAGAACTGGAGGATTCTTGACTTCTTCTCCCACCATCCTGAAAGTTTGCACATGTTCTCCTTCCTATTTGATGATTTGGGTGTTCCACAAGATTATAGA
CATATGGAAGGCTCTGGTGTTAACACCTACATGTTGATCAACAAGGCTGGAAAAGCCCATTATGTGAAATTTCATTGGAAACCTACTTGTGGTGTGAAAT
GTTTGTTGGAGGATGAGGCAGTTAAAGTAGGAGGCACAAATCACAGTCATGCTACTCAGGATCTATATGACTCCATTGCAGCTGGCACCTATCCTGAGTG
GAAACTTTTCATCCAGACAATTGATCCTGACCATGAAGCCAGGTTTGATTTTGACCCACTTGATGTAACCAAGACCTGGCCTGAGGATATCTTGCCCCTG
CAGCCAGTTGGTCGCTTGGTCTTGAATAAGAACATCGACAACTTCTTTGCTGAAAATGAGCAGCTTGCTTTCTGCCCTGCTATTGTGGTTCCTGGTGTTT
ACTATTCAGATGACAAGCTACTCCAGACTCGAATCTTCTCCTATGCTGATACCCAGAGGCACCGTCTTGGACCAAACTATCTGCAGCTCCCTGCTAATGC
TCCCAAGTGTGCTCATCATAACAATCACCATGAAGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCAACTATTTCCCATCAAGGTATGATCCAGTT
CGCCATGCTGAGAGTTTCCCCATTCCTCCTGCTGTCTGCAGTGGAAAGCGTGAGAAGTGCATCATTGAGAAGGAGAACAACTTCAAGCAACCTGGAGAGA
GATACCGATCCTGGGCACCAGACAGGCAAGAACGATTTATTTGCCGATGGGTTGATGCCTTATCTGACCCACGCGTCACACATGAGATTCGCAGCATCTG
GATCTCGTACTGGTCTCAGGCTGATAAATCTTTGGGTCAGAAGCTAGCATCTCGTCTCAACGTGAGACCAAGCATTTGA
AA sequence
>Potri.002G009800.5 pacid=42779501 polypeptide=Potri.002G009800.5.p locus=Potri.002G009800 ID=Potri.002G009800.5.v4.1 annot-version=v4.1
MDPYKYRPSSAFGTPYWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISGLTCADFLRAPGVQTPVI
VRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGVPQDYR
HMEGSGVNTYMLINKAGKAHYVKFHWKPTCGVKCLLEDEAVKVGGTNHSHATQDLYDSIAAGTYPEWKLFIQTIDPDHEARFDFDPLDVTKTWPEDILPL
QPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPV
RHAESFPIPPAVCSGKREKCIIEKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRSIWISYWSQADKSLGQKLASRLNVRPSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35090 CAT2 catalase 2 (.1.2) Potri.002G009800
[exp]
0 1 CAT1,Pt-CAT1.4
AT1G32160 Protein of unknown function (D... Potri.003G097400
[exp]
1.41 0.9687
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.014G102100
[exp]
4.35 0.9698
AT4G14870 SECE1 secE/sec61-gamma protein trans... Potri.008G153400
[exp]
4.89 0.9674
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G098800
[exp]
6.00 0.9622
AT3G29670 PMAT2 phenolic glucoside malonyltran... Potri.004G096132
[exp]
7.48 0.9608
AT2G39000 Acyl-CoA N-acyltransferases (N... Potri.008G039300
[exp]
9.38 0.9530
AT1G76080 ATCDSP32, CDSP3... ARABIDOPSIS THALIANA CHLOROPLA... Potri.005G245700
[exp]
10.90 0.9618
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.002G139400
[exp]
11.13 0.9628
AT5G39050 PMAT1 phenolic glucoside malonyltran... Potri.004G096425
[exp]
12.96 0.9566
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Potri.010G117200
[exp]
13.41 0.9625 APG2.1

Potri.002G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.