Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76310 550 / 0 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 528 / 0 CYCB2;3 Cyclin B2;3 (.1) AT2G17620 369 / 8e-125 CYCB2;1 Cyclin B2;1 (.1) AT4G35620 368 / 1e-124 CYCB2;2 Cyclin B2;2 (.1) AT1G20590 269 / 5e-89 Cyclin family protein (.1) AT5G06150 272 / 5e-87 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 268 / 1e-85 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT1G16330 261 / 1e-80 CYCB3;1 cyclin b3;1 (.1) AT2G26760 246 / 1e-77 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT4G37490 246 / 6e-77 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251400 [exp] 739 / 0 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 493 / 3e-174 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 493 / 7e-174 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.001G272000 [exp] 276 / 6e-89 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 267 / 2e-85 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.016G033000 [exp] 265 / 4e-84 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 258 / 2e-81 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.010G173200 [exp] 247 / 5e-75 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 233 / 8e-70 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016015 [exp] 570 / 0 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10012261 [exp] 512 / 4e-180 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10013226 [exp] 508 / 1e-179 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 495 / 1e-174 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10036080 [exp] 276 / 7e-89 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 271 / 8e-87 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10039033 [exp] 228 / 1e-69 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10001765 [exp] 234 / 5e-69 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10003800 [exp] 215 / 9e-65 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10008103 [exp] 214 / 3e-64 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G010000.1 pacid=42777681 polypeptide=Potri.002G010000.1.p locus=Potri.002G010000 ID=Potri.002G010000.1.v4.1 annot-version=v4.1 ATGGCTGGATCCGATGAGAACTACCCGGGTGTGATCGGACCCGGAAATGTTCAAGGGGTTTTACGTGGCGGAGTAGGGAAGTTTCCGGTGGCGACAGGAA CTAATCGCCGGGCGCTGAGCAACATTAATCGGAACATCATTGGAGGTCCACCGTACCCCTGTGCTGTCAACAAAAGAGGGTTATCGGAAAGAGAAGGTAT TTGTATTAAGAACCCACCAATTCCAGTGCATCGACCTATCACTAGGAAGTTCGCTGCCCAGCTTGCTAACAAGCAGCAGCAACAATATAAACCAGAGGAA ATAAAAAAACCAGTTCTGTCGGAACCAATTTCTAGTGAGCCAGAAGATTGTAACATCATAGATGTGGAGGACTACAAGAGCAGTAATGACTTTGCTGTGC CAATGTATGTGCAACATACAGAGGCAATGTTGGAGGAGATTGACCGGATGGATGAAGTTGAAATGGAAGATGTTGAAGAAGAGCCGATCATGGACATAGA CGGCTGTGACAAGAAGAATCCACTTGCTGTAGTTGAATACGTTGATGATTTATACAATTTCTACAAGAAAGCAGAGATATCTGGCTTTGTCGCATCAAAC TACATGGAACAGCAATTTGACATCAACGAGAGAATGAGAGGCATTCTCATTGATTGGTTGATTGAGGTGCACTACAAGTTTGAATTGATGGAGGAGACCT TATACCTTACTGTCAATCTCATCGATAGATTTCTAGCAGTCCAGCCCGTAGCGAGAAAGAAACTCCAGCTCGTTGGAGTGACAGCCATGCTACTTGCATG CAAATATGAAGAAGTATCTGTTCCAGTTGTTGAGGATCTCATTCTGATTTCTGATAAAGCATACAGCAGAAAAGAAGTGCTTGACATGGAGAAGCTCATG GTGAACACCTTACAATTTAATCTATCTGTTCCCACTCCATATGTTTTTATGAGGAGATTCCTAAAGGCTTCACAATGCGACACGAAGCTTGAACTTCTGT CATTCTTCATTGTTGAGCTCTGCCTCGTTGAATATGACATGCTCAAGTTTCCACCTTCATTGTTAGCTGCTGCTGCAATATATACTGCTCAATGTACTCT TAGTGGAACAAAGCAATGGAGCAAGACTAATGAGTATTATACTAGCTACTCAGAAGAGCAGCTCAGGGAATGTTCAAGGCTTATGGTTAATTTTCATAGG AATTCTGGAACAGGGAAGCTAACAGGCGTACATCGGAAGTATAGCACCTCTAAATTTGGTTATGCTGTGAAGAACGAGCCTGCTAACTTTTTACTGGAAG CTCAATTTTAG
AA sequence Show only first row Show all	>Potri.002G010000.1 pacid=42777681 polypeptide=Potri.002G010000.1.p locus=Potri.002G010000 ID=Potri.002G010000.1.v4.1 annot-version=v4.1 MAGSDENYPGVIGPGNVQGVLRGGVGKFPVATGTNRRALSNINRNIIGGPPYPCAVNKRGLSEREGICIKNPPIPVHRPITRKFAAQLANKQQQQYKPEE IKKPVLSEPISSEPEDCNIIDVEDYKSSNDFAVPMYVQHTEAMLEEIDRMDEVEMEDVEEEPIMDIDGCDKKNPLAVVEYVDDLYNFYKKAEISGFVASN YMEQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQPVARKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLM VNTLQFNLSVPTPYVFMRRFLKASQCDTKLELLSFFIVELCLVEYDMLKFPPSLLAAAAIYTAQCTLSGTKQWSKTNEYYTSYSEEQLRECSRLMVNFHR NSGTGKLTGVHRKYSTSKFGYAVKNEPANFLLEAQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.002G010000 [exp]	0	1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	1.00	0.9822
AT3G03130			unknown protein		Potri.013G081600 [exp]	2.00	0.9800
AT4G17000			unknown protein		Potri.009G081900 [exp]	2.64	0.9790
					Potri.006G190400 [exp]	2.82	0.9812
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.002G200300 [exp]	3.16	0.9794	ATCSLD5.2
AT4G02800			unknown protein		Potri.002G053100 [exp]	4.24	0.9810
AT5G15510			TPX2 (targeting protein for Xk...		Potri.017G092100 [exp]	4.24	0.9792
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	4.47	0.9762
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	6.32	0.9776
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	7.48	0.9749

Compare expression of checked genes

Potri.002G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.