Plant FIBer expression Database

Potri.002G010100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30600 1110 / 0 BTB/POZ domain-containing protein (.1.2.3.4.5)
AT4G08455 43 / 0.0003 BTB/POZ domain-containing protein (.1)
AT5G13060 44 / 0.0005 ABAP1 ARMADILLO BTB protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G251300
[exp]
1406 / 0 AT2G30600 1140 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5)
Potri.002G077000
[exp]
44 / 0.0003 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016014
[exp]
1197 / 0 AT2G30600 1131 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5)
Lus10012262
[exp]
1189 / 0 AT2G30600 1117 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5)
Lus10042763
[exp]
44 / 0.0002 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1)
Lus10029732
[exp]
44 / 0.0003 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0033 POZ PF00651 BTB BTB/POZ domain
CL0004 Concanavalin PF12248 Methyltransf_FA Farnesoic acid 0-methyl transferase
Representative CDS sequence
>Potri.002G010100.2 pacid=42780019 polypeptide=Potri.002G010100.2.p locus=Potri.002G010100 ID=Potri.002G010100.2.v4.1 annot-version=v4.1
ATGATAGAAGAGAACAAGTTTCTCACAGTAGCACCATTTCAGTGTGCTTGGAGAAAAGATTTGAAATTTAGGGAAGCAGGAAGAGGCTGTGTGGCTTTTG
ATGCTTTTGCTCACAATGATGTTACAGTGGTGTTTAGGGAGAATGTAGGAAGCCAACACTACCATTATAAGAGGGATAACAGTCCTCATTATACTGTGAT
TCTTGGGAGTCATAGGAATCGCCGATTGAAAATTGAGGTTGATGGCAAAACAGTTGTTGATGAGGAGGGAGTTGCGCTTTGCTGCTCTTCCACTTTTCAA
AGTTATTGGATCAGTATTTATGATGGGTTGATTAGTGTTGGCAAAGGGAGATACCCTTTTCAGAATCTTGTATTCCAGTGGTTAGATTCGAACCCAAACT
GTAGTGTTCGGTATGTTGGTCTTAGCTGTTGGGATAAACATGTCGGGTATAGAAATGTCAATGTGTTGCCATTACCAAACAATCATATGTTGCTATGGAA
GCAAGTTGACTCCGGAGAATATGAGGGGAAGGAAGAGGAGCTAGAAGGTGAACAGCTGAGCTATGAGAAATGGGGACTCGAAAATTTTCTTGAGAGTAGG
GAATTATCTGATGTATTGTTCATTGTTGGCAAGGACAAAAGACTTGTCCCAGCTCATAAGGTTATCTTACAAGCATCTGGTAATTTTCCTTTGAGCTTGC
CAAATGAAGATGTTATTCAGCTCCAGAACATATCATATCCAATTCTTCATGCACTTCTTCAATATATATACACTGGCCAGACACAGATTTCAGAGGCGCA
ACTTGGTTCTTTGCGGGCTCTGAGCTTACAATTTGAACTGATGCCACTGGTGAGGCAGTGTGAGGAAACTGCGGAACGATTTAAACTGAATAAAAAGTTA
TTTGACTCTGGTAAGAGTGTGGAATTATCATATCCAAGCTTCCAGCCCCATTGCTGTATGGCCTTTCCTTCTCAACTACCTATGAATGTGAAAAGGCTTA
GGCAGTTGCAGTCGACTGGAGACTATAGCGACATAAACATTTACATTGAGGGTCATGGTCTTGTTGCTCAACTTCACAAAGTCATTCTAAGTTTATGGAG
TGTTCCATTTTCAAAGATGTTTACAAATGGAATGAGTGAGAGTAGCTCCTCGGAGGTTTTCTTAAGCGATGTGTCACCTGAAGCCTTCAAGGTCATGCTT
GAATTCTTGTATAGCGGAGTACTCAGCCTGGAAGATTCTGTGGAATTTGGAACCTTGCTACTCCAGGTTCTTTTGTTAGCTGATCAATTTGGGGTCACTC
ACCTTTACCAAGAATGCTGCAAAACACTTTTAGAGTGTCTCTCTGAGGACTCAGTATGTCCAATCCTTCAAGCGGTGTCATCAATTCCATCATGTAAACT
CATTGAAGAAACATGCGAGAGGAAATTTGCTATGCACTTCGATTATTGTACCACCGCAAGCCTTGACTTCATCTTATTAGATGAGTCAAATTTTAGCAAT
ATCGTTCAGCATCAAGATCTAACTGTAACATCTGAAGAAAGAGTCCTCAACGCAATAATCATGTGGGGTATGAGAGCTAGAGAATTGTGTGGATGGGAGG
AGGTATCTGAGCTACTTGCACTTTCAACTCCTGACCTCCTTTTCAAGGACAGGCTTCAATCCCTGGATGACTTCTTGCCATTTGTGCGATTTCCATTGAT
GCCACACGACTTGCTTAAGAAGCTGGGGCAGAGCAACCTAGGCAGGCATGTTCCCATCTTTCACGATCTTGTGAGAGAGGGCATCAGTTATGTAGAATTC
GAATCCCTAAGGCCTGGGAATGAACAAAACCTAAGGTTTCAACATAGGCGATCTAGCTACAAGGAGCTTCAGTACATATCTGATGGTGACAGCAATGGAG
TACTCTACTTTGCTGGTACATCTTACGGGGAACATCAGTGGATTAATCCCCTTTTGGCGAAGAGAATCACGATCACTGCCAGCAGCCCCCCTTCGAGATA
CACTGACCCCAAGGCTTTAGTGTCACGAACTTACCAGGGAACGTGCTTTGCTGGGCCTCGTGTGGAAGGTGGACAAATACATGCATGGTGGATGATTGAC
ATCGGCCAAGATCATCAGCTTATGTGCAACCACTACACTTTGAGACAAGATGGGTCAAGAGCCTTCATAAGATGTTGGAATTTGCAGGGTTCCCTGGATG
GGAAGACCTGGACAAACTTGAGAGTGCACGAGAACGACCAGACAATGTGCAAGGCTGGTCAGTTTGCATCATGGCCCATAACCGGGCCACAAGCTCTACT
TCCATTTAGATTCTTCAGGGTTGTTCTTACAGGTCCCACGACAGATGGCTCGAACCCGCACAATTTGTGCATTTGCTTCTTGGAACTCTATGGTTACTTC
CACTAG
AA sequence
>Potri.002G010100.2 pacid=42780019 polypeptide=Potri.002G010100.2.p locus=Potri.002G010100 ID=Potri.002G010100.2.v4.1 annot-version=v4.1
MIEENKFLTVAPFQCAWRKDLKFREAGRGCVAFDAFAHNDVTVVFRENVGSQHYHYKRDNSPHYTVILGSHRNRRLKIEVDGKTVVDEEGVALCCSSTFQ
SYWISIYDGLISVGKGRYPFQNLVFQWLDSNPNCSVRYVGLSCWDKHVGYRNVNVLPLPNNHMLLWKQVDSGEYEGKEEELEGEQLSYEKWGLENFLESR
ELSDVLFIVGKDKRLVPAHKVILQASGNFPLSLPNEDVIQLQNISYPILHALLQYIYTGQTQISEAQLGSLRALSLQFELMPLVRQCEETAERFKLNKKL
FDSGKSVELSYPSFQPHCCMAFPSQLPMNVKRLRQLQSTGDYSDINIYIEGHGLVAQLHKVILSLWSVPFSKMFTNGMSESSSSEVFLSDVSPEAFKVML
EFLYSGVLSLEDSVEFGTLLLQVLLLADQFGVTHLYQECCKTLLECLSEDSVCPILQAVSSIPSCKLIEETCERKFAMHFDYCTTASLDFILLDESNFSN
IVQHQDLTVTSEERVLNAIIMWGMRARELCGWEEVSELLALSTPDLLFKDRLQSLDDFLPFVRFPLMPHDLLKKLGQSNLGRHVPIFHDLVREGISYVEF
ESLRPGNEQNLRFQHRRSSYKELQYISDGDSNGVLYFAGTSYGEHQWINPLLAKRITITASSPPSRYTDPKALVSRTYQGTCFAGPRVEGGQIHAWWMID
IGQDHQLMCNHYTLRQDGSRAFIRCWNLQGSLDGKTWTNLRVHENDQTMCKAGQFASWPITGPQALLPFRFFRVVLTGPTTDGSNPHNLCICFLELYGYF
H

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30600 BTB/POZ domain-containing prot... Potri.002G010100
[exp]
0 1
AT2G45440 DHDPS2 dihydrodipicolinate synthase (... Potri.014G071100
[exp]
2.00 0.7389
AT5G25560 CHY-type/CTCHY-type/RING-type ... Potri.006G245400
[exp]
2.82 0.7429
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
4.89 0.7134
AT3G08890 Protein of unknown function, D... Potri.006G104000
[exp]
6.32 0.6871
AT5G45310 unknown protein Potri.004G234300
[exp]
13.41 0.6309
Potri.010G214500
[exp]
16.00 0.6728
AT1G24100 UGT74B1 UDP-glucosyl transferase 74B1 ... Potri.015G071900
[exp]
19.44 0.6241
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
25.09 0.6438
AT1G15060 Uncharacterised conserved prot... Potri.012G053700
[exp]
27.87 0.6072
AT4G19150 Ankyrin repeat family protein ... Potri.003G103400
[exp]
28.77 0.6570

Potri.002G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.