Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20560 823 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 721 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 590 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G76290 574 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 542 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 534 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G65880 533 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT5G16370 523 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 518 / 8e-180 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 503 / 6e-174 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250700 [exp] 1015 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 788 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G102901 [exp] 605 / 0 AT1G20560 608 / 0.0 acyl activating enzyme 1 (.1.2) Potri.007G059401 [exp] 595 / 0 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.016G034800 [exp] 593 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 588 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 588 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036300 [exp] 585 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 584 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016011 [exp] 862 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 756 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012266 [exp] 752 / 0 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10016870 [exp] 588 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 588 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10007369 [exp] 588 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10037734 [exp] 587 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 587 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10020787 [exp] 574 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 551 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G010600.1 pacid=42777295 polypeptide=Potri.002G010600.1.p locus=Potri.002G010600 ID=Potri.002G010600.1.v4.1 annot-version=v4.1 ATGGAGGGCATGGTCAAATGTTCAGCTAACTACGTTCCTTTGACTCCAATCAGCTTTCTTGAACGCTCAGCGATTGTTTACAGAGACAGAATCTCTGTTA TCGATGGTGATGTTAAGTACACCTGGAAGGAGACTCATGAGAGGTGCATCAGACTCGCTTCTGCTCTTGCCCATCTCGGGATTTCCCCTGGTGATGTGGT TGCTGCGTTGGCCCCAAATATACCAGCAATGTATGAGCTACATTTTGGTGCTCCAATGGCCGGGGCAGTTTTGTGTACTCTTAATGTCCGCCATGATTCT TCAATGGTTTCTGTCTTGCTGAAACATTCGGAGGCTAAAGTTATTTTTGTAGACCACCAATTTCTCTCAATTGCTCAAGGAGCACTTGAGATTCTCCGGG AGACAAAAACCAAGCTGCCGCTTCTTGTCTTAATCTCTGAGTGTGGTCAGCCGGCTGCCATTTCCTCTCCTGGAATCTTGGAATATGAGAGTCTCTTGGC AACCAGAAAATTGGACTTTGAAGTTAGATGGCCGAAAGACGAATGGGATCCCATTTCGCTTAATTATACTTCAGGCACTACATCAAGTCCAAAAGGTGTT ATTTATAGCCATAGAGGAGCTTATCTTAATTCTTTCGCTGCTGTTCTTCTAAGTGAGATGAGCTCAATGCCTGTATATCTATGGTGTGTCCCCATGTTTC ATTGCAATGGTTGGTGTCTTACTTGGGCAGTGGCTGCACAAGGTGGTACTAATGTTTGTCAGAGAAATGTCACTGCGAAAGATATATTTGAAAATATTGC TCAGCACAAGGTTACTCACTTGGGTGGTGCACCAACAGTTTTGAACATGATAATAAATGCATCAGCTAGAGATAGAAAGCCTCTTCCAGGAAAAGTGTCA GTCATGACAGGAGGTGCGCCTCCACCATCTCATGTGCTGTACAAGATGGAAGAATTAGGATTTCACGTGACTCACGCATATGGTTTGACAGAAACTTACG GTCCTGGTACAGTTTGCACATGGAAACCTGAATGGGCATCCTTACCTCGTGAAAGTCAAGCAAAGATCAAGGCTCGTCAAGGGGTGCAACATCTTGGATT GGAGGAACTTGATATAAAAGATCCCGTTACCATGAAGAGTGTACCGGCAGATGCAAAAACCATGGGCGAGGTTATGTTTAGAGGCAATACTGTGATGAAT GGATATCTAAAAAATTTGAAAGCGACAAAAGATGCATTCAATGGTGGATGGTTTAGGAGTGGGGACTTAGGGGTGAAACATCCTGATGGTTACATAGAGC TAAAGGACCGATCGAAAGACATTATAATTTCAGGGGGTGAAAATATCAGCTCAATTGAGGTAGAGTCTGTACTCTTTAGTCATCCTGCAGTTCTGGAAGC AGCTATAGTAGGACGACCTGATGATTACTGGGGAGAAACACCTTGTGCATTTGTGAAGTTGAAGGATGGCTGTAATGCGAATTCTGAAGAACTTATCAAG TTTTGTAGAGATCACTTGCCCCATTACATGGCACCTCGAACTGTTGTGTTTCAGGAATTGCCAAAGACTTCAACTGGAAAGGTACAAAAATTTGTCTTGA AGGAGAAGGCCAAGGCCATGGGAAGCATTTCAAAGGGAAACACTAGTAGACTGTAA
AA sequence Show only first row Show all	>Potri.002G010600.1 pacid=42777295 polypeptide=Potri.002G010600.1.p locus=Potri.002G010600 ID=Potri.002G010600.1.v4.1 annot-version=v4.1 MEGMVKCSANYVPLTPISFLERSAIVYRDRISVIDGDVKYTWKETHERCIRLASALAHLGISPGDVVAALAPNIPAMYELHFGAPMAGAVLCTLNVRHDS SMVSVLLKHSEAKVIFVDHQFLSIAQGALEILRETKTKLPLLVLISECGQPAAISSPGILEYESLLATRKLDFEVRWPKDEWDPISLNYTSGTTSSPKGV IYSHRGAYLNSFAAVLLSEMSSMPVYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRNVTAKDIFENIAQHKVTHLGGAPTVLNMIINASARDRKPLPGKVS VMTGGAPPPSHVLYKMEELGFHVTHAYGLTETYGPGTVCTWKPEWASLPRESQAKIKARQGVQHLGLEELDIKDPVTMKSVPADAKTMGEVMFRGNTVMN GYLKNLKATKDAFNGGWFRSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESVLFSHPAVLEAAIVGRPDDYWGETPCAFVKLKDGCNANSEELIK FCRDHLPHYMAPRTVVFQELPKTSTGKVQKFVLKEKAKAMGSISKGNTSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	0	1
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	1.00	0.8414
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	4.47	0.7817
AT5G65950			unknown protein		Potri.001G457201 [exp]	6.92	0.7666
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	7.68	0.7310
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G183800 [exp]	8.30	0.7862
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.014G132400 [exp]	8.71	0.7829
					Potri.001G168400 [exp]	9.48	0.7716
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	13.41	0.7393
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.012G016000 [exp]	16.73	0.7399
					Potri.003G065900 [exp]	19.44	0.7292

Compare expression of checked genes

Potri.002G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.