Plant FIBer expression Database

Potri.002G010800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42320 607 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G250300
[exp]
733 / 0 AT5G42320 606 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016010
[exp]
639 / 0 AT5G42320 611 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Lus10012267
[exp]
583 / 0 AT5G42320 583 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF00246 Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence
>Potri.002G010800.1 pacid=42778313 polypeptide=Potri.002G010800.1.p locus=Potri.002G010800 ID=Potri.002G010800.1.v4.1 annot-version=v4.1
ATGGCTTCTCTCCTCCCTCTCCTCTTTTTCTTCTTTTTCGCTTCTCCTTCACTTGTCAATGCTAAAACTAATTCCACTATCACTTCAATAAATCGCGATC
TCTACCATTCCAGTGCTGATTTGTTAGAGCAAATAAAGGCATTGGTACACCGTCACCCAGATAAACTTACCGCGGAGACGATTAAAACAGGAAACAAGGG
TTATAAAGCAGAGATCACTGTAGTTACTTATTGCAGAAGTAGGAAAGAGACTGATGACAGGTCAAAGTTTCGGATTCTTCTTAGTTTCGGGCAGCATGGG
AGGGAGCTAATTACAACAGAACTTGCGTTTCGGATCTTGTCGGTTTTAAGCGAGGAACAGTTTCTACCTGATGTAGATGCTGCTTCTTTAAACAATACCC
TAGACAAGCTCATCGTAAAGGTCGTGCCAATGGAAAACTTGAATGGACGGAAACTTGTTGAGGAAGGAGATCTTTGTGAGAGAAGAAATGGTAGAGGAGT
TGATCTCAACCGGAATTGGAGCGTTGATTGGGGAAAAAAGGAGAAGGACTATGATCCATATGAAGAAAATCCTGGAACTGGTCCTTTTAGTGAGCCTGAA
ACTCAAATAATGCGGAAACTCGCCTTAACGTTCGATCCTCACATATGGGTTAATGTGCATTCGGGAATGGAGGCATTATTTATGCCTTATGACCACAGGA
ATACAACCCCTGATGGTGTGCTATCAGAACGTATGAGGTCATTGCTTGGTAAACTGAACAATGTTCATTGCCACAAACATTGTATGATTGGCTCAGGAGG
AGGCTCTGTTGGGTATCTTGCACATGGGACAGCAACAGATTTCATGTACGACATTGTAAAAGTGCCTATGGCTTTCACCTTCGAGATATACGGAGATACC
GCAGCTTCTTCAAAGGACTGCTTTAAAATGTTCAATCCTGTTGATCTTACTACCTTCAATAGAGTTCTCAATGACTGGTCTTCCGCTTTTTTCACAATTT
TCAAGTTGGGACCGCTCCAGCTAGATGGAAACCATTCGAAGGCCATGGCGTCTGGTGTGGACAGGTTTGTATCCATTGATGAATATCTTGATGGGTACTT
AATGGAAAGGAGAAATAGATATGGTAAAAAGATGGAGGTGCTAGATGTTGGAATGCAGGAGATAAGAACGTATTTTAGGCTCTTCTTATTATCCTCAGTT
TTGTTATTGTTCATGTTCTGTTCTAGAATTGCAAAGGGCAAGTCAAGTAGACCTATAGTCTCAGCCTTATCCATCTGA
AA sequence
>Potri.002G010800.1 pacid=42778313 polypeptide=Potri.002G010800.1.p locus=Potri.002G010800 ID=Potri.002G010800.1.v4.1 annot-version=v4.1
MASLLPLLFFFFFASPSLVNAKTNSTITSINRDLYHSSADLLEQIKALVHRHPDKLTAETIKTGNKGYKAEITVVTYCRSRKETDDRSKFRILLSFGQHG
RELITTELAFRILSVLSEEQFLPDVDAASLNNTLDKLIVKVVPMENLNGRKLVEEGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTGPFSEPE
TQIMRKLALTFDPHIWVNVHSGMEALFMPYDHRNTTPDGVLSERMRSLLGKLNNVHCHKHCMIGSGGGSVGYLAHGTATDFMYDIVKVPMAFTFEIYGDT
AASSKDCFKMFNPVDLTTFNRVLNDWSSAFFTIFKLGPLQLDGNHSKAMASGVDRFVSIDEYLDGYLMERRNRYGKKMEVLDVGMQEIRTYFRLFLLSSV
LLLFMFCSRIAKGKSSRPIVSALSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42320 Zn-dependent exopeptidases sup... Potri.002G010800
[exp]
0 1
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.009G078700
[exp]
5.00 0.7227
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.016G075500
[exp]
7.21 0.6919
AT5G17250 Alkaline-phosphatase-like fami... Potri.003G059300
[exp]
8.24 0.6618
AT4G16460 unknown protein Potri.006G016100
[exp]
9.79 0.6646
AT1G08660 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (... Potri.014G145400
[exp]
11.74 0.6505
AT4G02030 Vps51/Vps67 family (components... Potri.014G120900
[exp]
13.22 0.6609
AT1G25570 Di-glucose binding protein wit... Potri.010G129300
[exp]
19.44 0.6365
AT5G57330 Galactose mutarotase-like supe... Potri.018G089800
[exp]
31.30 0.4788
AT4G32960 unknown protein Potri.018G061800
[exp]
39.38 0.5740
AT5G13570 TDT, DCP2, ATDC... TRIDENT, decapping 2 (.1.2) Potri.010G222800
[exp]
45.07 0.5969

Potri.002G010800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.