Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42310 939 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G18940 223 / 3e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 214 / 3e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 214 / 4e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 214 / 4e-59 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 213 / 4e-59 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 210 / 3e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 211 / 1e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 207 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G28010 202 / 1e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250200 [exp] 1157 / 0 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 226 / 2e-64 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 220 / 4e-62 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 220 / 1e-61 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 216 / 6e-61 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 217 / 9e-61 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 214 / 2e-60 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 214 / 2e-60 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 219 / 4e-60 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016009 [exp] 954 / 0 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012268 [exp] 951 / 0 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013894 [exp] 226 / 5e-63 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 224 / 4e-62 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 221 / 8e-62 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043417 [exp] 223 / 9e-62 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 218 / 9e-62 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10002107 [exp] 220 / 2e-61 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 216 / 3e-60 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 216 / 3e-59 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.002G010900.1 pacid=42780028 polypeptide=Potri.002G010900.1.p locus=Potri.002G010900 ID=Potri.002G010900.1.v4.1 annot-version=v4.1 ATGCTTCTGTTCCCGCAACCTCTCCCAAATCGTTTCCCTTCAATTTCCATAACTTCTCCAATCTTCCAGCACCACCACCGTATCCTCCAACCACAACTCG CCGCCACTCCCACCACCACTGCCCTCACCGCCACAAATCTCACCGACTCCTCCTTCCCTTACTCAAAACGACATCACGAAACTTCACAAAATGACATCGA AGACTACTACAACGACGACGACGACGACGACGACATTCTCCCTCTCCAAAGCCTCCGTTACGACTTCACTCCACTCATCAACTACCTCTCCAACAAAATT TCCACTTCCACCGACTCGGACTCCGACTCAGCCTCTCCTACATCATTAGACTCCACCGAGTTCCAACTCGCCGAGTCATACCGTGTAGTCCCTGGTCCAC TCTGGCACTCCCTATTAAAATCTCTCTGTACTTCCTCTTCCTCTATTCCTCTCGCTTACGCTGTCGTTTCTTGGCTTCAAAAGCATAACCTCTGTTTCTC TTACGAGCTGCTCTACTCTATTTTGATCCACGCACTTGGTCAGTCAGAGAAACTATACGAGGCCTTTTTGCTCTCTCAAAAGCAAAATTTGACTCCATTA ACTTATAATGCCCTGATTAGCGCGTGTGCACGGAATAATGATATTGAAAAAGCGCTTAATTTGATATGTAGAATGAGGGAGGACGGTTATCCTTCGGATT TGGTTAATTATAGTTTAATAATTAGGTCATTAATGAAGAATAACAGAGCAAATTCTTCGATTTTGCAAAAGATTTACAGGGAAATTGATCGTGATAAGCT TGAAGTTGATGTGCAGTTATGGAATGATATTATTGTTGGGTTTTCGAAAGCTGGGGATTTAGATAAAGCGTTGGAGTTTTTGGGTGTGGTGCAAGGAAGT GGATTGAGTGTGAAAACTGCCACGCTTGTGACAGTGATTTGGGGTTTGGGGAATTGTGGTAGGACAGAGGAAGCGGAGGCAATTTTTGAAGAAATGAGAG ACAATGGATTGCAACCGAGGACCAGGGCGTATAATGCACTTCTTAGAGGGTATGTGAAAGCGGGTTTGTTGAGAGACGCAGAGTTTGTTGTTTCGGAGAT GGAGAGGAGTGGTGTTTTGCCAAATGAACAGACTTATAGTTTGTTGATTGATGCGTATGGGAATGCGGAGAGATGGGAGAGTGCGAGGATTGTGTTGAAG GAAATGGAAGCGAGTAATGTGCAGCCTAATGCATATGTTTTTAGTCGGATTTTGGCGAGTTATCGGGATAAAGGGGAGTGGCAGAAAACTTTTCAGGTTT TAAGGGAAATGGAGGACAGTGGGGTGCGTCCTGATAGGATATTTTATAATGTTTTGATTGATACTTTTGGCAAGTTCAATTGTCTTGATCATGCCATGGC TACCTTTGATAGGATGTTATCGGAAGGGATAGAGCCTGACACAATTACTTGGAATACACTTGTAGACTGTCATTGTAAGGCAGGGAAGCATGATAGAGCG GAGGAGTTGTTTGAGGAAATGATGGAAAAAGGCTACTTGCCTTGTAATACTACATTTAACATTATGATTAATTCATTTGGGGACCAGGAGAGATGGGACG ATGTGAAGAATTTGTTGACAAATATGCGGAGTCAGGGTTTATTGCCTAATGCCGTGACATACACTACCCTTATTGATATTTACGGGAAATCAGGTAGGTT TGATGATGCAATTGAGTGCTTGGATGATATGAAGGCTGCAGGACTGAAACCATCCTCTACTATGTACAATGCTTTGCTAAATGCCTATGCACAGAGGGGT TTGTCTGATCAAGCTGTAAGTGCATTTTGGGCAATGAGGGATGATGGCCTAAAGCCTAGTCTCTTAGCTCTCAATTCGTTGATTAATGCATTTGGAAAGG ATAGGAGGGATGTTGAAGCTTTCGTAGTGTTGCAGTACATGAAGGAAAATGATTTGAAGCCAGATGTGGTTACTTATACAACACTTATGAAAGCTCTGAT TCTTGTTGAGAAGTTTGATAAGGTGCCATCTGTGTATGAAGAAATGATTTTGTCTGGGTGCACCCCAGATAGGAAAGCCAGAGCAATGTTACGCTCTGCT CTGAAATACATGAAGCAAACACTGGAATAG
AA sequence Show only first row Show all	>Potri.002G010900.1 pacid=42780028 polypeptide=Potri.002G010900.1.p locus=Potri.002G010900 ID=Potri.002G010900.1.v4.1 annot-version=v4.1 MLLFPQPLPNRFPSISITSPIFQHHHRILQPQLAATPTTTALTATNLTDSSFPYSKRHHETSQNDIEDYYNDDDDDDDILPLQSLRYDFTPLINYLSNKI STSTDSDSDSASPTSLDSTEFQLAESYRVVPGPLWHSLLKSLCTSSSSIPLAYAVVSWLQKHNLCFSYELLYSILIHALGQSEKLYEAFLLSQKQNLTPL TYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFSKAGDLDKALEFLGVVQGS GLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLK EMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRA EELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRG LSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSA LKYMKQTLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	0	1
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	3.46	0.9559
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.001G297300 [exp]	3.74	0.9414
AT4G24090			unknown protein		Potri.001G084500 [exp]	9.27	0.9475
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	9.38	0.9369
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	11.00	0.9343
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	11.74	0.9465
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.019G093400 [exp]	13.07	0.9362
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	13.26	0.9461
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	14.07	0.9312
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	16.06	0.9444

Compare expression of checked genes

Potri.002G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.