Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63610 431 / 4e-152 unknown protein AT5G14970 87 / 3e-19 unknown protein AT2G14910 82 / 5e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250000 [exp] 524 / 0 AT1G63610 441 / 7e-156 unknown protein Potri.001G298200 [exp] 86 / 1e-18 AT2G14910 419 / 1e-145 unknown protein Potri.009G092800 [exp] 79 / 5e-16 AT2G14910 421 / 9e-147 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016008 [exp] 409 / 3e-143 AT1G63610 409 / 1e-143 unknown protein Lus10030753 [exp] 387 / 6e-135 AT1G63610 397 / 6e-139 unknown protein Lus10013233 [exp] 382 / 5e-133 AT1G63610 389 / 1e-135 unknown protein Lus10026601 [exp] 85 / 4e-18 AT2G14910 396 / 9e-137 unknown protein Lus10013888 [exp] 77 / 4e-15 AT2G14910 380 / 8e-130 unknown protein Lus10032180 [exp] 52 / 3e-07 AT5G14970 327 / 4e-111 unknown protein Lus10014506 [exp] 52 / 3e-07 AT5G14970 329 / 5e-111 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [poplar] [flax] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Potri.002G011000.1 pacid=42778724 polypeptide=Potri.002G011000.1.p locus=Potri.002G011000 ID=Potri.002G011000.1.v4.1 annot-version=v4.1 ATGGTCTCGTTGACAGTGACGGGCTCCTTTGTATCTAAATTATCTTCTTCTTCGAACAGCTCAACAGTTCTTGTCTCGACTCGATCTCGACTATGTTCTT CAGTTTGTTTTCCAGGAAACAAGGGGAGCTACTGTAGTGAAAGGAGGTTTGGCTTTCGAGTTAAGGCTTACGATTCTTCTAAGAATGACTCTTCTTCTAA TAACAATAACTCTGGTGACGCCAAGCCGCCTAATGGTACTATGCCAAAGACCAGGAGGGAAATTCTATTGGAATATGTCAAAAATGTTCAGCCTGAGTTC ATGGAGCTTTTTGTAAAACGAGCACCCCAGCAGGTTGTTGATGCGATGAGACAGACAGTGGCTAATATGATTGGGACTCTGCCTCCGCAGTTTTTCGCTG TAACAGTTACTACTGTGGCTGAAAATCTTGCGCAGCTCATGTATAGTGTTATGATGACGGGCTATATGTTCAAGAATGCACAATACCGGTTGGATTTGCA ACAAAGTTTGGAGCAGGTTGCACTTCCTGATGCACAAGAAGAAAAGAAGGATGAGCCAGATTATGCACCTGGTACACAGAAAAATGTGTCTGGTGAAGTT ATTCGGTGGAATAATGTTTCCGGCCCTGAAAGAATTGATGCTAAAAAATACATCGAGTTACTTGAAGCGGAGATTGAAGAACTCAATAGTCAAGTTGGCA GAAAATCTGCAAATGGACAGAATGAATTATTGGAATATCTCAAGTCTCTTGAGCCCCTAAATTTGAAGGATTTGACAAGCAGTGCTGGAGAGGATGCTGT TCTTGCAATGAACACGTTCATCAAGCGTCTTTTGGCTGTTTCAGGTCCCGACCAAATGAAGACATCTGTAACAGAGACTAGTGCACCAGAGCTTGTAAAG CTGCTTTATTGGTTGATGGTGGTTGGGTACAGCATTCGCAACATTGAAGTCCGTTTTGACATGGAACGAGTACTTGGTGCACCTCCAAAGCTTGCAGAGT TACCACCTGGAGAAAATGTTTAA
AA sequence Show only first row Show all	>Potri.002G011000.1 pacid=42778724 polypeptide=Potri.002G011000.1.p locus=Potri.002G011000 ID=Potri.002G011000.1.v4.1 annot-version=v4.1 MVSLTVTGSFVSKLSSSSNSSTVLVSTRSRLCSSVCFPGNKGSYCSERRFGFRVKAYDSSKNDSSSNNNNSGDAKPPNGTMPKTRREILLEYVKNVQPEF MELFVKRAPQQVVDAMRQTVANMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLDLQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEV IRWNNVSGPERIDAKKYIELLEAEIEELNSQVGRKSANGQNELLEYLKSLEPLNLKDLTSSAGEDAVLAMNTFIKRLLAVSGPDQMKTSVTETSAPELVK LLYWLMVVGYSIRNIEVRFDMERVLGAPPKLAELPPGENV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63610			unknown protein		Potri.002G011000 [exp]	0	1
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.004G092500 [exp]	6.00	0.8347
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Potri.004G138400 [exp]	13.56	0.7856
AT1G18010			Major facilitator superfamily ...		Potri.012G005100 [exp]	29.29	0.8043
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Potri.015G012400 [exp]	145.70	0.7894
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	181.64	0.7690

Compare expression of checked genes

Potri.002G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.