Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20540 579 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G76260 535 / 0 DWA2 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (.1) AT1G29260 59 / 2e-09 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT1G79990 58 / 6e-09 structural molecules (.1.2.3.4.5) AT1G52360 57 / 1e-08 Coatomer, beta' subunit (.1.2) AT3G15980 57 / 1e-08 Coatomer, beta' subunit (.1.2.3.4.5) AT2G16780 50 / 1e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 49 / 2e-06 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT4G02730 49 / 3e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 47 / 1e-05 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249800 [exp] 648 / 0 AT1G20540 616 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 66 / 5e-12 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.011G066600 [exp] 57 / 2e-09 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.001G179200 [exp] 57 / 7e-09 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 57 / 1e-08 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.009G135100 [exp] 51 / 5e-07 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 49 / 2e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 49 / 4e-06 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G197700 [exp] 47 / 1e-05 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034576 [exp] 501 / 1e-179 AT1G20540 522 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021818 [exp] 478 / 1e-169 AT1G20540 499 / 4e-178 Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 65 / 2e-11 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 65 / 2e-11 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10026094 [exp] 60 / 9e-10 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10005074 [exp] 57 / 7e-09 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 57 / 1e-08 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10011467 [exp] 55 / 7e-08 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10014674 [exp] 53 / 2e-07 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 52 / 3e-07 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G011200.2 pacid=42778255 polypeptide=Potri.002G011200.2.p locus=Potri.002G011200 ID=Potri.002G011200.2.v4.1 annot-version=v4.1 ATGCAAGGAGGATCAACTGGCATTGGCTATGGCCTCAAATATCAGGCAAGGTGCATATCAGATGTGAAGGCAGACACGGATCACACCAGCTTCATCACTG GAACTCTCAGTCTCAGAGAAGAAAACGAGGTGCACTTGCTTAGGTTATCTGCAGGCGGAACTGAATTGATATGCGAAGGATTGTTTTCGCACCCTGAAGA GATCTGGAATCTCTCTTCCTGTCCTTTTGATCAACGTGTTTTCTCCACTGTTTTCTCCTCTGGTGAGTCATTTGGAGCAGCAGTGTGGCAGATTCCTGAG TTATATGGGCAGTTAAATTCTCCGCAATTGGAAAGGATTGCGTCTCTTGATGGACATGTTGGGAAGCTTAATTGTGTCCTATGGTGGCCATCGGGAAGGA ATGATAAGTTGATAAGCATTGATCAGGAAAATATCTTCTTGTGGAGTTTAGATTGTTCAAGACAAGCAGCCCAGGTAGAGGTGCAATCGAAGGAGTCGGC TGGTATGCTGCATTACTTATCTGGTGGAGCCTGGGATCCACATGACGTGAATGCTGTTGCAGCAACTTGTGAATCCTCAGTCCAGTTTTGGGATCTACGG GCGATGAAGAAAACAAATTCAATTGAGTGCGGCCATGTTCGCAATGTAGACTATGACACCAGGAAGAAACATATACTTGTTACCGCAGAGGATGAATCTG GGATACACATTTGGGATCTTAGAATGCCCAAGGTTCCTGTAAAAGAGCTTCGTGGACATTCACACTGGACATGGGCTGTCGCATGCAACCCTGAATATGA TGGACTGATCCTGAGTGGTGGTTCAGACTCGACTGTCAATTTGTGGTTCGCTTCTACGACAACCAGTGATGAGTTGACATCTGAAAGTGTGTTTAAATCA CCAACTCGGGAACTTGATTCAATGCTGCTGAACTCATTCAGTGACTATGACGACAGTGTCTATGGGCTTGCTTGGAGTTCTCAGGAACCTTGGATTTTTG CATCTTTATCCTATGATGGGAGGGTTGTAGTAGAATCAATAAAGCCTTATCTCCCCAAAAAATGA
AA sequence Show only first row Show all	>Potri.002G011200.2 pacid=42778255 polypeptide=Potri.002G011200.2.p locus=Potri.002G011200 ID=Potri.002G011200.2.v4.1 annot-version=v4.1 MQGGSTGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLLRLSAGGTELICEGLFSHPEEIWNLSSCPFDQRVFSTVFSSGESFGAAVWQIPE LYGQLNSPQLERIASLDGHVGKLNCVLWWPSGRNDKLISIDQENIFLWSLDCSRQAAQVEVQSKESAGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR AMKKTNSIECGHVRNVDYDTRKKHILVTAEDESGIHIWDLRMPKVPVKELRGHSHWTWAVACNPEYDGLILSGGSDSTVNLWFASTTTSDELTSESVFKS PTRELDSMLLNSFSDYDDSVYGLAWSSQEPWIFASLSYDGRVVVESIKPYLPKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20540			Transducin/WD40 repeat-like su...		Potri.002G011200 [exp]	0	1
AT1G09812			unknown protein		Potri.004G224200 [exp]	4.47	0.8977
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	4.89	0.9063
AT3G09410			Pectinacetylesterase family pr...		Potri.006G084900 [exp]	6.48	0.8930
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.019G128900 [exp]	7.48	0.9117
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	7.54	0.9091
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	7.87	0.9134
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	7.93	0.9028
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	11.95	0.8964
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.008G063600 [exp]	12.72	0.8832
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	13.56	0.8563

Compare expression of checked genes

Potri.002G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.