Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76250 506 / 1e-178 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249600 [exp] 667 / 0 AT1G76250 493 / 2e-173 unknown protein Potri.012G136700 [exp] 114 / 4e-30 AT1G76250 66 / 3e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012274 [exp] 492 / 5e-173 AT1G76250 483 / 1e-169 unknown protein Lus10016006 [exp] 488 / 3e-171 AT1G76250 483 / 6e-170 unknown protein Lus10008273 [exp] 381 / 3e-130 AT1G76250 374 / 2e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G011400.1 pacid=42778114 polypeptide=Potri.002G011400.1.p locus=Potri.002G011400 ID=Potri.002G011400.1.v4.1 annot-version=v4.1 ATGACCAAACCTCCTTTCATGTCCAGATGGTTCTCTGATCTATATTGGAAACCTCTCCTCTTCACCATCCCTCCTCTCACTCTCCTCCTTTTCCTCACCG TCTCTTTGACACCCATCAACCCTTTTTCCTCTTTTGCCCCCTTCGCTTCCCACTTCCTCAATAAAACCGCGTCCGTGAACACCCTCTCCCCCGCCGCCAC CACCACAACGACAACAACAACATCGATTTATTCCTCAATTGCTCCCCCGAGTTTGGCGCCCGTGAATCGCAGTGCGTCAACTTCGTTGAACGATGAGTTG GGTCGGTCTAGAATGGCGGTGTGTTTGGTTGGTGGGGCCAGGAGGTTTGAACTGACTGGACCCTCCATTGTCAAGAATATTCTCCAAGTGTATCCAAATT CAGACCTGTTTTTACACAGTAATTTTGACGACAAAGCCTTCAAATTTTCTCTCTTGAAGTCTGTTCCTAGGCTTGCCTCTGTCCGGATCATCCATCCTAA ACCTCTGCTTGAGACCTTGCCTCAGCTCCGTGTCCTCACTGCTGCTAACTCTCCTAATGGCATACAGGGCCTGCTTCAATATTTTAATCTCGTAGAAGGA TGTCTGACAATAATCCAGGAATACCAAAGCCTAAAGGGTTTTAAGTATGACTGGATAATCCGTACCCGTGTTGATGGGTACTGGAATGCTCCATTGGGGC CTGAAAATTTCATCCCGGGTCACTATCTGGTTCCACCAGGATCTACTTATGGTGGCCTTAATGACCGGCTTGGCATTGGTGATCTTAACACCTCAACAGT AGCCCTTTCGCGTCTTTCGCTGGTTCCCCAGCTTGACGCTGCTGGATTTCGTCAACTCAACTCAGAAACTGCTTTTAAAGCCCAGCTTACTACACAAGGT GTTCCTTTGGTTACTAAAAGATTGCCCTTTTGTATTGTTACTGATCGTAGATACGAGTTTCCTCCTAAACGGTTCGGGGTGCCGGTGGCTGCATTGTCGA GTCCCGGCCCGTTAAGTGGTGCGAAATGCAGGCCTTGTAATCCTGTTTGTGAAGGGACTTGTGTAGGTAAGGTTATGACATCGCTTCATAAGGGTTGGAG TTGGACTAACTGGGAAAACGGGACACTTAAGTTATGTGATGCACATGGTGAGTGGGAGAGGCGGTGGGAAAAGATTTTTGATAGAGTTGCTGGGAAGGAA CTTGCCTCCGGAAGGAAGAGGATTATGGGTCTAAAGGAGAAGCAATGTTTGGATGATTTTAATGAAATGAAGAAAAGGGCTTTCAAGTGGGATAGTCCTC CAGTGGAGGAGATATGTAGATTAGGCCTTGGACAGAATTAG
AA sequence Show only first row Show all	>Potri.002G011400.1 pacid=42778114 polypeptide=Potri.002G011400.1.p locus=Potri.002G011400 ID=Potri.002G011400.1.v4.1 annot-version=v4.1 MTKPPFMSRWFSDLYWKPLLFTIPPLTLLLFLTVSLTPINPFSSFAPFASHFLNKTASVNTLSPAATTTTTTTTSIYSSIAPPSLAPVNRSASTSLNDEL GRSRMAVCLVGGARRFELTGPSIVKNILQVYPNSDLFLHSNFDDKAFKFSLLKSVPRLASVRIIHPKPLLETLPQLRVLTAANSPNGIQGLLQYFNLVEG CLTIIQEYQSLKGFKYDWIIRTRVDGYWNAPLGPENFIPGHYLVPPGSTYGGLNDRLGIGDLNTSTVALSRLSLVPQLDAAGFRQLNSETAFKAQLTTQG VPLVTKRLPFCIVTDRRYEFPPKRFGVPVAALSSPGPLSGAKCRPCNPVCEGTCVGKVMTSLHKGWSWTNWENGTLKLCDAHGEWERRWEKIFDRVAGKE LASGRKRIMGLKEKQCLDDFNEMKKRAFKWDSPPVEEICRLGLGQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76250			unknown protein		Potri.002G011400 [exp]	0	1
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180500 [exp]	3.60	0.9147
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.007G110100 [exp]	3.74	0.9140
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	4.00	0.9096	AATP1.1,PtrAATP1
					Potri.017G111050 [exp]	5.00	0.9061
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.008G009800 [exp]	7.87	0.8643	MKK4.2
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	7.93	0.9130
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	10.58	0.8914
AT4G12731			unknown protein		Potri.001G226750 [exp]	10.95	0.8913
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	11.40	0.8900
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.002G081000 [exp]	14.45	0.8815	Pt-ATAF1.2

Compare expression of checked genes

Potri.002G011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.