Plant FIBer expression Database

Potri.002G011500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51020 71 / 2e-16 unknown protein
AT5G66370 59 / 2e-11 unknown protein
AT3G06130 44 / 1e-05 Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G103500
[exp]
68 / 7e-15 AT3G51020 65 / 1e-13 unknown protein
Potri.001G366600
[exp]
41 / 8e-05 AT3G13140 79 / 2e-18 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G011500.1 pacid=42778427 polypeptide=Potri.002G011500.1.p locus=Potri.002G011500 ID=Potri.002G011500.1.v4.1 annot-version=v4.1
ATGGCTTCACATCTCAACTCGAACATGTCTTGTGGCTTGAAAGTGGAGACCAAAGACCCTGAATGGCATAGGACATTAACCAAAGTACTGAAAAGAATCA
AAGGGGTTAGTTACGCCATAGATGTTGAACAAGGCATGGCTTACATCAGAGGTAGAGTGGATCCAAACAAGCTGCTTAAAAAGTTATCAAAAGGAGGAAA
ACATGCAGACATATGCTGGGTCGAGACAGGGAACATGAATCCTTACATGAACAATGGCTACCAGTATCCCCCCCGAGGAGGCTACCATCAGCCAGGGCCA
GCATATCACCAAGGCTATCACCCAGGTTATGCCATGCCCAGTTACTATCCGAAGAGACCACCCTCTTACTATGGCTATGGCTCTGCTTATGGCTATGATC
CTCGTAGCTATGTTTATCCTACCTGGGCTTAG
AA sequence
>Potri.002G011500.1 pacid=42778427 polypeptide=Potri.002G011500.1.p locus=Potri.002G011500 ID=Potri.002G011500.1.v4.1 annot-version=v4.1
MASHLNSNMSCGLKVETKDPEWHRTLTKVLKRIKGVSYAIDVEQGMAYIRGRVDPNKLLKKLSKGGKHADICWVETGNMNPYMNNGYQYPPRGGYHQPGP
AYHQGYHPGYAMPSYYPKRPPSYYGYGSAYGYDPRSYVYPTWA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51020 unknown protein Potri.002G011500
[exp]
0 1
AT1G21430 YUC11 Flavin-binding monooxygenase f... Potri.016G003300
[exp]
3.46 0.8550 FML10
AT5G49630 AAP6 amino acid permease 6 (.1) Potri.006G236100
[exp]
11.31 0.8968
AT3G19920 unknown protein Potri.007G073600
[exp]
12.00 0.8968
Potri.008G053150
[exp]
12.64 0.8968
AT1G66920 Protein kinase superfamily pro... Potri.012G003301
[exp]
17.00 0.8087
AT2G14760 bHLH bHLH084 basic helix-loop-helix (bHLH) ... Potri.014G017100
[exp]
20.19 0.7747
Potri.006G017750
[exp]
23.91 0.8547
Potri.003G109601
[exp]
31.93 0.7539
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.017G013200
[exp]
38.96 0.6640
AT5G20045 unknown protein Potri.008G015800
[exp]
41.95 0.7284

Potri.002G011500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.