Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35240 349 / 4e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G20530 329 / 3e-104 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 317 / 4e-98 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 235 / 2e-66 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 233 / 4e-66 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 158 / 7e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 143 / 1e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 137 / 2e-33 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G30130 130 / 2e-31 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 128 / 1e-30 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249400 [exp] 1008 / 0 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 372 / 5e-118 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 371 / 5e-118 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.002G082000 [exp] 255 / 5e-74 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 251 / 1e-72 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 191 / 2e-51 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 160 / 4e-41 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 158 / 2e-40 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 155 / 2e-39 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023949 [exp] 356 / 9e-115 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 355 / 3e-112 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10012276 [exp] 329 / 4e-104 AT4G35240 248 / 7e-74 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10016004 [exp] 315 / 5e-99 AT4G35240 253 / 1e-75 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 243 / 4e-71 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 245 / 6e-71 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 164 / 8e-43 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 153 / 7e-39 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 150 / 4e-38 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 142 / 9e-37 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.002G011700.1 pacid=42778321 polypeptide=Potri.002G011700.1.p locus=Potri.002G011700 ID=Potri.002G011700.1.v4.1 annot-version=v4.1 ATGGGCTGCTCCATTTCAAGGATTGACCAGCTCCCTGCAGTGTCTCTATGCCATGACCGATGTAAGTTCCTTGAAGAAGCTCTCTACCAAAGCTATGCCC TCGCCGATGCTCATGTTGCTTACATGCACTCCCTCAAGTCCCTCGGCCCTGCACTTCACCGCTTCTTTGATGAAGCCCTCATCAATAACCAGTCTGACTC TCAATCTAATGGCGATTCCGCGGCTGTTACCAAACTCAGTAAACCCTCTTCGCCTGATATTTTCTGTCCCTCAAGTTCTACAAACTCGGAGACTTCTCAC ATTGATTTCCGTTCTGATTCAGAAGATGAAGAATTTAAAGACAACAAAGATCTTGATTCGCTTCATAGAGTCCATAAAAGTCAGTTTAATCCGTTTTCTT ATGATCATCTTGACGATAATGAGTACGATTACCCAGCTTGGAAAACTCCTCCACCTCCGGCTCCAAGTAGTTCAGCCTGGGATTTCTTGAATTTCTTTGA AACATATGAAAGATATGAGTTACCGACCAAGGATAAGGAATTTGTGAATGGAATTCGTTTAGAAGGTAAATGTGGTAAAAATGGAGAAGAAGATAGGAGG GAAGCAGAGAAAGGTAACAATGTGAAGCAGAAGAAGGAGGCTAAAGTGGTAGAAGAAAAGAAAGTTGAATATGTGAAAGAGGAAAGTAAAGAGAGTAAAG ATTTAGGCCATCAGGCTAAAATCCAAAGTGTCTTGGAGGTTATGAAAGGAGTAGAGGTTTTGTTTGACAAAGCTGCAGAGTCAGGAAATGAAGTCTTGAA AATATTTGATGCTGGGAAATTCAGATATTATTACAAAAATTCTGTTTATCAAGGAGTTTCTTCCAAGATGTTGCACACTGTTACTCCGTCTTTTTCAGAG AAGAATGGTTCTGTTCATGGGGACTTTGATGAGGATTTGGGGATAATTTCTGTGAATCTGTCTTCTACTCTTAGAAAGCTGTGCTTGTGGGAGAAGAAAC TCTATCATGAAGTCAAGGCTGAGGAAAAATTGCGTCTCATTCTTGCGAAGAACTGTGGGCAGATGAACATCTTGGGTGAGAAAGGCGCTGATGCCAATAA AGTTAACTCCACTCAACCTTTACTCCGGATGCTATCTACGAAGATCACAGTTGCAATTCAAGTTATTGACAAGATATCAATTACTATCAGTAAATTGAGG GATGAAGAGTTGTGGCCACTGATCAGTGACTTGATTGAAAAGTTACTGGATATGTGGAAAGTTATGTTAGAATGCCACAGATGTCAGTCCCAGGCAGTTG TCGAAACCAGGAGTTTGGATGCCGTTGCTTCCAATGTGAAGTTTAGTGATGCCTATCTTGAAGCAGCAATACAGCTCAAGATTGAGCTACAAAACTGGAA TCTAAGCTTTTCCAATTGGATCAATGCACAAAGAGGCTACGTCAGAGCATTGAATGGTTGGCTTCTGAGGTGTCTTCCATCTGAACTTGAAGAAACTCTA GATGATGTGCCACCATTCTCCCCTGGTAGGACAGGAGCACCTCTGGTGTTTGCGTTCTGTAACCAGTGGTCACTTGCCATTGACAGGGTCTCAGAGATGG AGGTAATTTATGCAATGAATGGATTATTCGATATTGTAAATCAGTTCCTGGAACGACATCATGTTTACCTACAGCAAAGACTGACTACAGACAAGGACAT GGTGAAGAAAATGAAGATCTTGGAGAGGGAGGGGCAAAGGTTGCAAAAGGTGATTCAAGCTCGAGGGAAGACGTTTCAAGCCGGTAGAGCTGTACATCGA AGCGAAATGACCGATAATAGTAGTCTTCAGTTTGGTCTGAGACAAATTTTTGTAGCCATAGAGCAGTTCTCTGCCGATACCATGCACGGTTATGAGGAGC TTCATGTGCACATTGAACATAGTAGACTCGGTCAAGAGAATCCAGCAGCTCCTTAA
AA sequence Show only first row Show all	>Potri.002G011700.1 pacid=42778321 polypeptide=Potri.002G011700.1.p locus=Potri.002G011700 ID=Potri.002G011700.1.v4.1 annot-version=v4.1 MGCSISRIDQLPAVSLCHDRCKFLEEALYQSYALADAHVAYMHSLKSLGPALHRFFDEALINNQSDSQSNGDSAAVTKLSKPSSPDIFCPSSSTNSETSH IDFRSDSEDEEFKDNKDLDSLHRVHKSQFNPFSYDHLDDNEYDYPAWKTPPPPAPSSSAWDFLNFFETYERYELPTKDKEFVNGIRLEGKCGKNGEEDRR EAEKGNNVKQKKEAKVVEEKKVEYVKEESKESKDLGHQAKIQSVLEVMKGVEVLFDKAAESGNEVLKIFDAGKFRYYYKNSVYQGVSSKMLHTVTPSFSE KNGSVHGDFDEDLGIISVNLSSTLRKLCLWEKKLYHEVKAEEKLRLILAKNCGQMNILGEKGADANKVNSTQPLLRMLSTKITVAIQVIDKISITISKLR DEELWPLISDLIEKLLDMWKVMLECHRCQSQAVVETRSLDAVASNVKFSDAYLEAAIQLKIELQNWNLSFSNWINAQRGYVRALNGWLLRCLPSELEETL DDVPPFSPGRTGAPLVFAFCNQWSLAIDRVSEMEVIYAMNGLFDIVNQFLERHHVYLQQRLTTDKDMVKKMKILEREGQRLQKVIQARGKTFQAGRAVHR SEMTDNSSLQFGLRQIFVAIEQFSADTMHGYEELHVHIEHSRLGQENPAAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35240			Protein of unknown function (D...		Potri.002G011700 [exp]	0	1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.006G052600 [exp]	2.00	0.7877	CESA4.1
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	2.82	0.7642
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.008G057500 [exp]	7.74	0.7383
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	9.53	0.7494
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	12.96	0.6800
AT1G04650			unknown protein		Potri.001G053000 [exp]	13.52	0.7581
AT1G06330			Heavy metal transport/detoxifi...		Potri.018G150200 [exp]	25.39	0.6854
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	25.61	0.6858
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.017G055800 [exp]	28.37	0.6895
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G049700 [exp]	30.00	0.7514

Compare expression of checked genes

Potri.002G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.