Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35230 835 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G59010 623 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G50990 615 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT3G54030 603 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 593 / 0 BSK2 BR-signaling kinase 2 (.1) AT1G63500 593 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 590 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 585 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 521 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT2G17090 500 / 1e-174 SSP SHORT SUSPENSOR, Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249300 [exp] 915 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 863 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 858 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.006G093900 [exp] 629 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G179300 [exp] 625 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.016G105800 [exp] 624 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.009G039500 [exp] 622 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.001G246400 [exp] 620 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.003G088900 [exp] 603 / 0 AT5G46570 820 / 0.0 BR-signaling kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021823 [exp] 834 / 0 AT4G35230 802 / 0.0 BR-signaling kinase 1 (.1) Lus10003329 [exp] 723 / 0 AT4G35230 732 / 0.0 BR-signaling kinase 1 (.1) Lus10034573 [exp] 713 / 0 AT4G35230 778 / 0.0 BR-signaling kinase 1 (.1) Lus10040719 [exp] 613 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 604 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 602 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10031967 [exp] 600 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10016454 [exp] 594 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10035136 [exp] 593 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10001998 [exp] 586 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G011800.1 pacid=42778479 polypeptide=Potri.002G011800.1.p locus=Potri.002G011800 ID=Potri.002G011800.1.v4.1 annot-version=v4.1 ATGGGTTGTTGCCAATCTTCTTTGTTCAAAGCACCAATCTCTGATGACAGTAAAAACAATCAACAGCAACAGCAAAATCAACAGCAACAACCACAGCATG TACGAATTAATCATGCTTCACGGCCAACAAACGGAACGGAAACAAGCGGTGGTCTTGGAGGTGGTTGTGGGGTGCTGTCTTTCACGGAGTTCTCATTGGC TGACCTGAAAGCTGCGACGAACAACTTTAGTCCCGAGTTTATCGTGTCTGAAAGCGGTGAAAAAGCGCCAAATGTTGTTTACAAAGGACGGTTACAGAAT CATGATAACAATAATAATAGAAGTTGGATCGCTGTCAAGAAATTTACCAAACTTGCCTGGCCTGATCCCAAACAGTTCGCTGATGAAGCGTTGGGTGTTG GGAAATTGAGGCACAAAAGGTTAGCGAATTTGATTGGTTTTTGTTGCGTCGGAGACGAGAGGCTGTTGGTGGCTGAGTATCTGCCAAATGATACCCTTGC AAAACACTTATTCCACTGGGAAAACCAAACTATTGAGTGGGCAATGCGTTTGAGAGTTGCACTATATATTTCTGAAGCTTTAGATTATTGTAGTTCTGAA GGTCGTCCTCTGTATCATGACTTGAATGCTTACAGGGTGCTTTTTGACGAGAATGGAGATCCCCGGCTTTCATGTTTTGGATTGATGAAAAATAGCAGTG ATGGAAAGAGTTACAGTACAAATCTTGCTTATACACCTCCTGAGTACCTACAAAATGGAAGGGTCACTCCAGAAAGTGTCATCTTCAGCTTTGGGACTGT CCTTTTGGATCTTCTTAGCGGAAAGCACATCCCTCCTAGTCATGCTCTTGATATGATTCGAGGGAAGAACATTCGTCTTTTAATGGATTCTCATTTGGAG GGAAACTTTTCAACTGAAGAGGCGACTGTGGTTTTCGATCTTGCCTCACAATGCTTGCAATATGAACCAAGGGAGCGACCAAATACCAAAGATCTTGTTA CAACGCTTGCACCTCTGCAAAACAAACCTGATGTTCCATCCTATGTGATGCTGGGAATTTCTAAGCATGAAGAAACAGCACCACCTACCCCACAGCACCC GCTCTCTCCAATGGGTGATGCCTGTACACGGATGGATCTCACAGCTATCCATCAAATATTGGTAATGACACACTACAAAGATGATGAAGGAACCAACGAG TTATCTTTCCAAGAGTGGACACAACAAATGAGAGATATGTTGGAGGCTAGAAAGCGTGGAGATGTAGCATTTCGTGACAAAGATTTTAAAACTGCTGTAG AATGTTATTCTCAGTTTATAGATGTGGGAACAATGGTATCTCCAACTGTTTATGCCCGGCGTAGTCTTTGCCATCTACTATCTGATCAACCAGATGCTGC TCTCCGAGATGCGATGCAAGCACAATGTGTCTACCCTGATTGGTCTACAGCATTTTACATGCAAGCCGTTGCCCTTGCCAAGCTTGACATGCACAAGGAT GCAGCTGACATGTTGAACGAGGCTGCTGCATTGGAAGAAAAAAAGCAACGTGGTGGAAGATGA
AA sequence Show only first row Show all	>Potri.002G011800.1 pacid=42778479 polypeptide=Potri.002G011800.1.p locus=Potri.002G011800 ID=Potri.002G011800.1.v4.1 annot-version=v4.1 MGCCQSSLFKAPISDDSKNNQQQQQNQQQQPQHVRINHASRPTNGTETSGGLGGGCGVLSFTEFSLADLKAATNNFSPEFIVSESGEKAPNVVYKGRLQN HDNNNNRSWIAVKKFTKLAWPDPKQFADEALGVGKLRHKRLANLIGFCCVGDERLLVAEYLPNDTLAKHLFHWENQTIEWAMRLRVALYISEALDYCSSE GRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSSDGKSYSTNLAYTPPEYLQNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNIRLLMDSHLE GNFSTEEATVVFDLASQCLQYEPRERPNTKDLVTTLAPLQNKPDVPSYVMLGISKHEETAPPTPQHPLSPMGDACTRMDLTAIHQILVMTHYKDDEGTNE LSFQEWTQQMRDMLEARKRGDVAFRDKDFKTAVECYSQFIDVGTMVSPTVYARRSLCHLLSDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKD AADMLNEAAALEEKKQRGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	0	1
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	1.00	0.9575
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272800 [exp]	2.44	0.9510
AT1G33490			unknown protein		Potri.013G095200 [exp]	3.46	0.9360
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	3.74	0.9226
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Potri.018G025000 [exp]	4.35	0.9169
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	4.89	0.9483	Pt-SUS1.1
AT2G43420			3-beta hydroxysteroid dehydrog...		Potri.007G131200 [exp]	5.65	0.9323
AT3G42950			Pectin lyase-like superfamily ...		Potri.006G139500 [exp]	5.91	0.9355
AT5G67450	C2H2ZnF	AZF1	zinc-finger protein 1 (.1)		Potri.017G091800 [exp]	6.63	0.9251
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	7.74	0.9432

Compare expression of checked genes

Potri.002G011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.