Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 126 / 6e-35 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 112 / 1e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 105 / 5e-27 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 94 / 2e-22 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 72 / 8e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 74 / 1e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76210 71 / 3e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 71 / 8e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 67 / 1e-12 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012466 [exp] 395 / 3e-140 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 377 / 5e-133 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 374 / 8e-132 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 372 / 8e-131 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 368 / 2e-129 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 211 / 3e-67 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 203 / 2e-64 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 159 / 3e-47 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 158 / 7e-47 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023952 [exp] 131 / 1e-36 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 130 / 2e-36 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 129 / 6e-36 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 127 / 4e-35 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 124 / 4e-34 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 124 / 6e-34 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 121 / 5e-33 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 120 / 2e-32 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 116 / 7e-31 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 114 / 3e-30 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.002G012200.1 pacid=42778564 polypeptide=Potri.002G012200.1.p locus=Potri.002G012200 ID=Potri.002G012200.1.v4.1 annot-version=v4.1 ATGGCTACTTGTCATGTTCGTTCTATCAGCTGGCCCTCAAGTTCTCATCCTCTAAGTGTAAGCGTTGAAGATCAATTGGACAGGTTGAGATCATCACAAA CACCTTCCACTTCAGTTTACCAAAAAGCGAGGGGCCTCAGAGTTTTGTATGAGTGCGTAGATGATTTTCTTCAGTTACCACTAACGCAACAAACACTCTC CAATGAACAACAGAAGGAAAGGGCAGAAGAGGTGTTGAATGGATCTCTGCTGTTGTTGGATGTGTGCAGCAACACTAAAGATGTTTTCTCATCAATGAAA GAATGCTTTAAGAGACTAGAATCATCCCTCAGGAGGAGAAAAGGTGGGGAATCTGGCATCGCAAGTGAAATTGAAGCTTACGTGGTGTCTAGGAAACAAT TAAATAAAACAACCCGCAAATGCTTCAGAAATTTGAAGAGCATGGAGAAGCATAACACTTCAGCAGTTGATGCAGTCGGCATGCTAAGAGACGTTAAAGA AATAGCCCTGGAAATTTTCCAATCTCTCTTGTCTTTGGTTTCTCAGCCAAAGACAACATCAAGCTCCCATGGCTGGTCTGTCGTTTCAAAATTATTTCAA TCCAAGCGTGCATCATGCGAAGGCAAAGCCACCGAATGGGAAAAGATAGATGCTGAGTTGCTTGTCCTGAAGTCAGGCAAAGACATCAATCCTATACAAG TGAAAAATATATTGAAAGAACTAGAGCTATTAGAGTCAAGCATTCATGAAGCAGAGGAGGAGCTGGAGGCTGTTTACAGGAAATTGCTGAAAACCAGAGT TTCCATTCTCAACATTCTCAGCCACTAG
AA sequence Show only first row Show all	>Potri.002G012200.1 pacid=42778564 polypeptide=Potri.002G012200.1.p locus=Potri.002G012200 ID=Potri.002G012200.1.v4.1 annot-version=v4.1 MATCHVRSISWPSSSHPLSVSVEDQLDRLRSSQTPSTSVYQKARGLRVLYECVDDFLQLPLTQQTLSNEQQKERAEEVLNGSLLLLDVCSNTKDVFSSMK ECFKRLESSLRRRKGGESGIASEIEAYVVSRKQLNKTTRKCFRNLKSMEKHNTSAVDAVGMLRDVKEIALEIFQSLLSLVSQPKTTSSSHGWSVVSKLFQ SKRASCEGKATEWEKIDAELLVLKSGKDINPIQVKNILKELELLESSIHEAEEELEAVYRKLLKTRVSILNILSH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012200 [exp]	0	1
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Potri.002G244200 [exp]	37.41	0.7065	Pt-XTH2.1
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	43.68	0.6969
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Potri.001G007100 [exp]	58.02	0.6705
AT5G59960			unknown protein		Potri.009G028500 [exp]	60.09	0.6682
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	68.41	0.6828
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085800 [exp]	69.84	0.6914	Pt-CYP71.2
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	129.80	0.6461	Pt-PSPK3.1
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.005G119500 [exp]	136.93	0.6539	Pt-MPK7.1
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.009G115300 [exp]	152.43	0.6280	Pt-AGB1.1
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	173.17	0.6364

Compare expression of checked genes

Potri.002G012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.