Plant FIBer expression Database

Potri.002G012433 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G012100
[exp]
0 / 1 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0133 AT14A-like PF03087 DUF241 Arabidopsis protein of unknown function
Representative CDS sequence
>Potri.002G012433.1 pacid=42777038 polypeptide=Potri.002G012433.1.p locus=Potri.002G012433 ID=Potri.002G012433.1.v4.1 annot-version=v4.1
ATGGAGAAGAAGGGCATATCAGCAACCTTGGACAAAGACACCACCTTGGTAGCTCTGACAAAAGAAGCTGAAGAAATGAGTGTTGCTGTTTTCGCATCCC
TCTTATCTTCTATTTCTTTGACAACAAAATCAAAGGGGAGTGGCAGCTGGTCTATTGTTTCAAAACTAAAGAAGTCCAAACGTGTAGTTGATGCCAAGAC
ATTACTCCTGCACAAGTCCAAAATGTATCGAAAAGTTTGGAGGCATTACATTGGAGTATTCAAGAAGCAGAAGAGGAGTTGGAATGTGTCTACAGACTAC
TAG
AA sequence
>Potri.002G012433.1 pacid=42777038 polypeptide=Potri.002G012433.1.p locus=Potri.002G012433 ID=Potri.002G012433.1.v4.1 annot-version=v4.1
MEKKGISATLDKDTTLVALTKEAEEMSVAVFASLLSSISLTTKSKGSGSWSIVSKLKKSKRVVDAKTLLLHKSKMYRKVWRHYIGVFKKQKRSWNVSTDY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G012433
[exp]
0 1
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.004G149000
[exp]
4.24 0.9601 Pt-AOS.4,CYP74C7-1
AT5G39820 NAC ANAC094 NAC domain containing protein ... Potri.004G126901
[exp]
5.47 0.9553
Potri.017G102200
[exp]
7.41 0.9389
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Potri.018G139400
[exp]
8.00 0.9510 PIN9,Pt-PIN2.4
AT5G44640 BGLU13 beta glucosidase 13 (.1) Potri.001G015100
[exp]
8.48 0.9423 Pt-L1.1
AT4G12840 Protein of unknown function (D... Potri.014G175800
[exp]
11.61 0.9147
AT3G62760 ATGSTF13 Glutathione S-transferase fami... Potri.014G132200
[exp]
11.83 0.9407 Pt-ATGSTF13.1
AT5G60520 Late embryogenesis abundant (L... Potri.009G012600
[exp]
12.12 0.9436
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Potri.019G125600
[exp]
12.36 0.9418
AT1G20190 ATHEXPALPHA1.14... EXPANSIN 11, expansin 11 (.1) Potri.002G017900
[exp]
12.64 0.9028 ATEXPA11.2

Potri.002G012433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.